PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001796m
Common NameCARUB_v10001796mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 252aa    MW: 28122.8 Da    PI: 9.9755
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001796mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.4e-1865113254
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                      +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Carubv10001796m  65 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 113
                      69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.14E-3564124No hitNo description
PROSITE profilePS5103220.71965122IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2065124IPR016177DNA-binding domain
SMARTSM003808.1E-4165128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3365122IPR001471AP2/ERF domain
PfamPF008471.1E-1065114IPR001471AP2/ERF domain
PRINTSPR003671.5E-106677IPR001471AP2/ERF domain
PRINTSPR003671.5E-1088104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MKLKPTVLIA TLHSSNKAPS LSSFFSSSFL TFPQTTKHLK THLNKPYTTP FSSTSKTKMA  60
RPQQRFRGVR QRHWGSWVSE IRHPLLKTRI WLGTFETAED AARAYDEAAR LMCGPRARTN  120
FPYNPNAVPT SSSKLLSATL TAKLHKCYMA SLQMTKQTQT QTQTHNSRLR TTETDGDNIN  180
GVMANGNQFN RGGGGGGGVK AETTEIKWED GNMNMEQNFS PLEDDHIEQM IEELLHYGSI  240
ELCSVLPTQT L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1764127468ATERF1
3gcc_A3e-1764127468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001796m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0456591e-111AY045659.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288525.21e-146ethylene-responsive transcription factor ERF003
SwissprotQ94AW51e-105ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLR0HCM40.0R0HCM4_9BRAS; Uncharacterized protein
STRINGXP_006288525.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-82ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]