PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001788m
Common NameCARUB_v10001788mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 254aa    MW: 28493.1 Da    PI: 8.4684
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001788mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.57.3e-42211522128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      + GfrF Pt++elv +yL++++eg++ +++++vi+ +d+++veP++Lp+    ++++++++w+fF++r++++a+g r++r+t sgyWkatg+  
  Carubv10001788m  21 TIGFRFYPTEDELVAFYLRNQLEGRSdVSVHRVIPVLDVFDVEPSHLPNiageRCRGDTEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPG 114
                      57**********************997788889***************656666666888********************************** PP

              NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +v+s +++ +g+kkt+vfy+g+ap+g+kt+W m+ey++
  Carubv10001788m 115 PVFSVDNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 152
                      ************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-4616176IPR003441NAC domain
PROSITE profilePS5100546.04520177IPR003441NAC domain
PfamPF023651.5E-2222151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
LASRVFHCRS HTKKKMADEV TIGFRFYPTE DELVAFYLRN QLEGRSDVSV HRVIPVLDVF  60
DVEPSHLPNI AGERCRGDTE QWFFFVPRQE REARGGRPSR TTGSGYWKAT GSPGPVFSVD  120
NRMIGVKKTM VFYTGKAPTG RKTKWKMNEY KAVDETVNSS TIPKLRHEFS LCRVYITTGS  180
SRAFDRRPSV GVLQTERMPT SDVAVAGTSS FRVEGSPETS ISGGEHVDLS TNIDFVEGGL  240
TESIWEWEPL SWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-322318223173NAC domain-containing protein 19
3swm_B2e-322318223173NAC domain-containing protein 19
3swm_C2e-322318223173NAC domain-containing protein 19
3swm_D2e-322318223173NAC domain-containing protein 19
3swp_A2e-322318223173NAC domain-containing protein 19
3swp_B2e-322318223173NAC domain-containing protein 19
3swp_C2e-322318223173NAC domain-containing protein 19
3swp_D2e-322318223173NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001788m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1758060.0AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20.
GenBankAY0869440.0AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288518.21e-176NAC domain-containing protein 90
SwissprotQ9FMR31e-146NAC90_ARATH; NAC domain-containing protein 90
TrEMBLR0FHF50.0R0FHF5_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006288518.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-138NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]