PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001788m | ||||||||
Common Name | CARUB_v10001788mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 28493.1 Da PI: 8.4684 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.5 | 7.3e-42 | 21 | 152 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 + GfrF Pt++elv +yL++++eg++ +++++vi+ +d+++veP++Lp+ ++++++++w+fF++r++++a+g r++r+t sgyWkatg+ Carubv10001788m 21 TIGFRFYPTEDELVAFYLRNQLEGRSdVSVHRVIPVLDVFDVEPSHLPNiageRCRGDTEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPG 114 57**********************997788889***************656666666888********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s +++ +g+kkt+vfy+g+ap+g+kt+W m+ey++ Carubv10001788m 115 PVFSVDNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 152 ************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-46 | 16 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.045 | 20 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-22 | 22 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
LASRVFHCRS HTKKKMADEV TIGFRFYPTE DELVAFYLRN QLEGRSDVSV HRVIPVLDVF 60 DVEPSHLPNI AGERCRGDTE QWFFFVPRQE REARGGRPSR TTGSGYWKAT GSPGPVFSVD 120 NRMIGVKKTM VFYTGKAPTG RKTKWKMNEY KAVDETVNSS TIPKLRHEFS LCRVYITTGS 180 SRAFDRRPSV GVLQTERMPT SDVAVAGTSS FRVEGSPETS ISGGEHVDLS TNIDFVEGGL 240 TESIWEWEPL SWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-32 | 23 | 182 | 23 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-32 | 23 | 182 | 23 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-32 | 23 | 182 | 23 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-32 | 23 | 182 | 23 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-32 | 23 | 182 | 23 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-32 | 23 | 182 | 23 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-32 | 23 | 182 | 23 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-32 | 23 | 182 | 23 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001788m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK175806 | 0.0 | AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20. | |||
GenBank | AY086944 | 0.0 | AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288518.2 | 1e-176 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-146 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | R0FHF5 | 0.0 | R0FHF5_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006288518.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-138 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001788m |
Entrez Gene | 17882942 |
Publications ? help Back to Top | |||
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