PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001768m
Common NameCARUB_v10001689mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 258aa    MW: 28601.2 Da    PI: 6.851
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001768mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3109.91.2e-3445152199
                      EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+k ltpsdv+k++rlv+pk++ae++         ++++e+++ l++ede+g+sW+++++y+++s++yvltkGW++Fvk+++L+ gD+v F+++
  Carubv10001768m  45 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavadnSSSSEKGMLLSFEDETGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRH 138
                      99*******************************99777889***************************************************98 PP

                      SSSEE..EEEEE-S CS
               B3  86 grsefelvvkvfrk 99 
                      +++ ++l+++++r+
  Carubv10001768m 139 RSDLRRLFIGWRRR 152
                      8799999****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-4141160IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-3143152IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-2844143No hitNo description
PfamPF023621.2E-3145152IPR003340B3 DNA binding domain
PROSITE profilePS5086314.55145153IPR003340B3 DNA binding domain
SMARTSM010194.1E-2745153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSVNHYSTDH HHTLLWQQQH HTTDASETAT TTAAWLNDDL KESLFEKSLT PSDVGKLNRL  60
VIPKQHAEKY FPLNAVADNS SSSEKGMLLS FEDETGKSWR FRYSYWNSSQ SYVLTKGWSR  120
FVKDKQLDPG DVVFFQRHRS DLRRLFIGWR RRGQGSSSAV NTSSMAAPSY RQIHHSSTNY  180
SNPPSHSEYS HYGAAVATAG ETHSTPSSSV VAGSSRTLRL FGVNLECQMD DNDGDDSAAA  240
AAAAVESPDG YYGQNII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-52411524113B3 domain-containing transcription factor NGA1
5os9_B3e-52411524113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001768m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0067004e-94AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
GenBankCP0026884e-94CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288431.10.0B3 domain-containing protein At5g06250
SwissprotQ9FNI31e-144Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLR0HCB80.0R0HCB8_9BRAS; Uncharacterized protein
STRINGXP_006288431.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-121B3 family protein