PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001764m | ||||||||
Common Name | CARUB_v10001764mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NF-YC | ||||||||
Protein Properties | Length: 258aa MW: 28975.9 Da PI: 5.1198 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 54.4 | 2.8e-17 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki+++de+v +i+ +P l+ska elf+ +l ++ + + +t+ ++++v + +ifdfl ++v + Carubv10001764m 6 QTRFPATRIKKIMQTDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDITLSRGAKTVSSFHLKQCVHSFNIFDFLRETVNK 86 789*************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.3E-25 | 2 | 72 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-17 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.64E-18 | 18 | 88 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT YDITLSRGAK 60 TVSSFHLKQC VHSFNIFDFL RETVNKVPDL GGSDAEDQSA TKRRKLVEDS NCNDEDFKST 120 QMHEVKHSGS GRGRRGRGRG RGGGRTGNGL SLKFEEDLED GSPESSRSPS PENRSHEYTS 180 WKKVASHNNP SNVRNFDLNV DLDENGDTAT WLERRLEGSP DWPLLGMNDM KLDPDQQQQQ 240 ASASDEEDYD EESIDQD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 6e-24 | 2 | 71 | 5 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 141 | RGRRGRGRGRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001764m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288499.1 | 0.0 | dr1-associated corepressor | ||||
TrEMBL | R0FGG8 | 0.0 | R0FGG8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006288499.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13968 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 1e-108 | NF-YC family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001764m |
Entrez Gene | 17882645 |