PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001764m
Common NameCARUB_v10001764mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YC
Protein Properties Length: 258aa    MW: 28975.9 Da    PI: 5.1198
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001764mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC54.42.8e-176861898
            NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                     ++++P +rikki+++de+v +i+  +P l+ska elf+ +l   ++  + +   +t+    ++++v + +ifdfl ++v +
  Carubv10001764m  6 QTRFPATRIKKIMQTDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDITLSRGAKTVSSFHLKQCVHSFNIFDFLRETVNK 86
                     789*************************************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.3E-25272IPR009072Histone-fold
PfamPF008083.2E-17871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.64E-181888IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT YDITLSRGAK  60
TVSSFHLKQC VHSFNIFDFL RETVNKVPDL GGSDAEDQSA TKRRKLVEDS NCNDEDFKST  120
QMHEVKHSGS GRGRRGRGRG RGGGRTGNGL SLKFEEDLED GSPESSRSPS PENRSHEYTS  180
WKKVASHNNP SNVRNFDLNV DLDENGDTAT WLERRLEGSP DWPLLGMNDM KLDPDQQQQQ  240
ASASDEEDYD EESIDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A6e-24271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131141RGRRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001764m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288499.10.0dr1-associated corepressor
TrEMBLR0FGG80.0R0FGG8_9BRAS; Uncharacterized protein
STRINGXP_006288499.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139682124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.11e-108NF-YC family protein