PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001713m | ||||||||
Common Name | CARUB_v10001713mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NF-YA | ||||||||
Protein Properties | Length: 270aa MW: 29809.5 Da PI: 9.4983 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 90.3 | 2.5e-28 | 134 | 186 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVNaKQy++I++RRq+Rak+e+ l +++rkpy+h+SRh hA+rRpRgsgGrF Carubv10001713m 134 GTIYVNAKQYHGIIRRRQSRAKAEK---L-SRCRKPYIHHSRHLHAMRRPRGSGGRF 186 689*********************9...6.888***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.9E-30 | 131 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 31.873 | 132 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.5E-24 | 135 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 137 | 157 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MQTEELLSPP QTPWWNAFGS QPLTTESLSG DASDAFAGVK AVTPETEQDV VDKQCSTTLF 60 TLSPGGGKSS QNVPKPHVAF TMQSACFEFG FARPTIYTKH PHVEQYYGVV SAYGSQRSSG 120 RVMLPLKMDT EEDGTIYVNA KQYHGIIRRR QSRAKAEKLS RCRKPYIHHS RHLHAMRRPR 180 GSGGRFLNTK KADATKQSKP SNSQSSEVFH PENKTMNSSR EANMPNLSGS EVTSMDYFLS 240 SSVYTPSGMV MPLKWNAATM DIGCCNLNT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-15 | 136 | 202 | 5 | 74 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
4g91_A | 2e-15 | 136 | 187 | 5 | 60 | HAPB protein |
4g92_A | 2e-15 | 136 | 187 | 5 | 60 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001713m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY084643 | 0.0 | AY084643.1 Arabidopsis thaliana clone 114015 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288452.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_023637202.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
Swissprot | Q8LFU0 | 0.0 | NFYAA_ARATH; Nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | R0H8U3 | 0.0 | R0H8U3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006288452.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 0.0 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001713m |
Entrez Gene | 17882688 |
Publications ? help Back to Top | |||
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