PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001689m | ||||||||
Common Name | CARUB_v10001689mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 275aa MW: 30761.6 Da PI: 6.9355 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 109.7 | 1.4e-34 | 45 | 152 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k ltpsdv+k++rlv+pk++ae++ ++++e+++ l++ede+g+sW+++++y+++s++yvltkGW++Fvk+++L+ gD+v F+++ Carubv10001689m 45 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavadnSSSSEKGMLLSFEDETGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRH 138 99*******************************99777889***************************************************98 PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 +++ ++l+++++r+ Carubv10001689m 139 RSDLRRLFIGWRRR 152 8799999****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.9E-41 | 41 | 160 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.23E-31 | 43 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.93E-28 | 44 | 143 | No hit | No description |
PROSITE profile | PS50863 | 14.551 | 45 | 153 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-31 | 45 | 152 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-27 | 45 | 153 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MSVNHYSTDH HHTLLWQQQH HTTDASETAT TTAAWLNDDL KESLFEKSLT PSDVGKLNRL 60 VIPKQHAEKY FPLNAVADNS SSSEKGMLLS FEDETGKSWR FRYSYWNSSQ SYVLTKGWSR 120 FVKDKQLDPG DVVFFQRHRS DLRRLFIGWR RRGQGSSSAV NTSSMAAPSY RQIHHSSTNY 180 SNPPSHSEYS HYGAAVATAG ETHSTPSSSV VAGSSRTLRL FGVNLECQMD DNDGDDSAAA 240 AAAAVESPDG YYGQNMYYYY PHPHNMNIAF TGER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-52 | 41 | 152 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-52 | 41 | 152 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001689m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB006700 | 5e-94 | AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15. | |||
GenBank | CP002688 | 5e-94 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288431.1 | 0.0 | B3 domain-containing protein At5g06250 | ||||
Swissprot | Q9FNI3 | 1e-148 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | R0GWN8 | 0.0 | R0GWN8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006288431.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 1e-124 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001689m |
Entrez Gene | 17883684 |