PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10001609m

Common Name

CARUB_v10001609mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Dof

Protein Properties

Length: 293aa MW: 32985.3 Da PI: 7.0995

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10001609m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.2	1.5e-37	63	121	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++ ++cprC+s+ntkfCyynnysl+qPry+Ck+CrryWt+GG+lrnvPvGgg+rknkk Carubv10001609m 63 PQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 121 67899****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	62	117	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.1E-33	65	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.444	67	121	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MDHHQYHHHD HDQYQHQMTI TNDIPYNTIV TTQPPPPTTT TTTATTMIMD DEKKLMTTMS 60 TRPQEPRNCP RCNSSNTKFC YYNNYSLAQP RYLCKSCRRY WTEGGSLRNV PVGGGSRKNK 120 KLPLLLPNSS TSSSTKNLPD LNPPFVFTSS PSNPSKTHDD NNELSLSFSS PMQDKRAQGH 180 YGHYTEQVVP GGQNGLFQAP MGMIQFRQEY DDHDNQKKNL GFSLDRNEEE IGNHDNFVVN 240 GGGSKMMYPY GGYEDHHQHV RHDDGNKKRE GGSSNELWSG IILGGDSGGP TW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10001609m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161491	0.0	AL161491.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 3.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	TM018A10	0.0	AF013294.1 Arabidopsis thaliana BAC TM018A10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006288361.1	0.0	dof zinc finger protein DOF4.1
Swissprot	Q9M161	1e-151	DOF41_ARATH; Dof zinc finger protein DOF4.1
TrEMBL	R0HC39	0.0	R0HC39_9BRAS; Uncharacterized protein
STRING	XP_006288360.1	0.0	(Capsella rubella)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00940.1	1e-140	Dof family protein

Link Out ? help Back to Top
Phytozome	Carubv10001609m
Entrez Gene	17882635