PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001579m | ||||||||
Common Name | CARUB_v10001579mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 299aa MW: 34003.3 Da PI: 10.5747 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.8 | 4.1e-18 | 19 | 110 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkv + +++++ +p +fa++++ ++ + +++++ +g sWevk+ +k+++ ++ ++GW++Fv +n L ++f++F+++g++ f Carubv10001579m 19 FFKVVNSVAISSENMRAIPHDFARKFSDNELLG-KMKIRVHWGSSWEVKI--SKNPRFyFMEKSGWEKFVTDNALGRNEFLTFTHKGKMHF--S 107 7777755556666888**********8886655.9***************..******555569********************9998888..5 PP EEE CS B3 94 vkv 96 v + Carubv10001579m 108 VNI 110 554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-17 | 14 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.6E-19 | 14 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.21E-17 | 18 | 110 | No hit | No description |
SMART | SM01019 | 7.6E-18 | 19 | 114 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.901 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-16 | 19 | 110 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-14 | 202 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.839 | 206 | 298 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-10 | 206 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.9E-11 | 209 | 298 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.64E-7 | 209 | 294 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MACNPEFLKC YEERKQESFF KVVNSVAISS ENMRAIPHDF ARKFSDNELL GKMKIRVHWG 60 SSWEVKISKN PRFYFMEKSG WEKFVTDNAL GRNEFLTFTH KGKMHFSVNI MKQIGKEMLQ 120 PPQTRAFFAS SSRFKTEQGV KTEEEVVSSD LNSRGPRTAP ESNGEGMCRR KLNFEKKKAE 180 ESQNSKRTER VVGIQRDFAG TSSSSVAGFS IVITKSYLTS LALPVSVVNF MPRVKSVVKI 240 HHPNGKKLWK VVFLVTRRGR LFSGGWRSLC MDYPVALGDT CKFTLINPHE LLLVVTKP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001579m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254597 | 1e-165 | AC254597.1 Capsella rubella clone CAP08-M05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288334.1 | 0.0 | B3 domain-containing protein REM23 | ||||
Swissprot | Q9LXE1 | 1e-139 | REM23_ARATH; B3 domain-containing protein REM23 | ||||
TrEMBL | R0FG33 | 0.0 | R0FG33_9BRAS; Uncharacterized protein | ||||
STRING | XP_006288334.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09780.1 | 1e-141 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001579m |
Entrez Gene | 17884324 |
Publications ? help Back to Top | |||
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