PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001539m | ||||||||
Common Name | CARUB_v10001539mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 308aa MW: 34062 Da PI: 4.6024 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.3e-19 | 104 | 153 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp+ r r++lg+++taeeAa +++a+ +l+g Carubv10001539m 104 KFRGVRQRP-WGKWAAEIRDPT----RrVRVWLGTYDTAEEAAVVYDNAAIQLRG 153 89*******.**********84....34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.7E-31 | 103 | 161 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.118 | 104 | 161 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-39 | 104 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 104 | 161 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-12 | 104 | 153 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.57E-32 | 104 | 160 | No hit | No description |
PRINTS | PR00367 | 2.7E-10 | 105 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
METEKKVSLQ RQREQRIKNI VTTQPRILRI SMTDPYATDS SSDEEQGFEA ISRKRRRVKR 60 YVNEVVLESV CDDKDDKAMK MTKKRRRQSV ATPPVVVTSA TSRKFRGVRQ RPWGKWAAEI 120 RDPTRRVRVW LGTYDTAEEA AVVYDNAAIQ LRGPNALLNF PPPPPPPVEE EAEETSDFIS 180 SGGGGCLASP VSVLQSPFSG ESTAVKEEFE FPGVSAMVEV KEEPLSTVSG TYTDFSESLF 240 SVDEFFGFPT SMTDCFGGDL FGEDLFTDMS FGSGFGFGSG SGFSSWHVED HFQDLGDLFG 300 SDPLLAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-22 | 100 | 161 | 1 | 63 | ATERF1 |
3gcc_A | 7e-22 | 100 | 161 | 1 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 56 | RKRRR |
2 | 52 | 59 | RKRRRVKR |
3 | 53 | 57 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001539m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288279.1 | 0.0 | ethylene-responsive transcription factor CRF1 | ||||
Swissprot | O82503 | 1e-112 | CRF1_ARATH; Ethylene-responsive transcription factor CRF1 | ||||
TrEMBL | R0FFZ1 | 0.0 | R0FFZ1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006288279.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 1e-106 | cytokinin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001539m |
Entrez Gene | 17884252 |
Publications ? help Back to Top | |||
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