PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001539m
Common NameCARUB_v10001539mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 308aa    MW: 34062 Da    PI: 4.6024
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001539mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19104153255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +g+W+AeIrdp+    r  r++lg+++taeeAa  +++a+ +l+g
  Carubv10001539m 104 KFRGVRQRP-WGKWAAEIRDPT----RrVRVWLGTYDTAEEAAVVYDNAAIQLRG 153
                      89*******.**********84....34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.7E-31103161IPR001471AP2/ERF domain
PROSITE profilePS5103224.118104161IPR001471AP2/ERF domain
SMARTSM003802.0E-39104167IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-22104161IPR016177DNA-binding domain
PfamPF008472.1E-12104153IPR001471AP2/ERF domain
CDDcd000181.57E-32104160No hitNo description
PRINTSPR003672.7E-10105116IPR001471AP2/ERF domain
PRINTSPR003672.7E-10127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
METEKKVSLQ RQREQRIKNI VTTQPRILRI SMTDPYATDS SSDEEQGFEA ISRKRRRVKR  60
YVNEVVLESV CDDKDDKAMK MTKKRRRQSV ATPPVVVTSA TSRKFRGVRQ RPWGKWAAEI  120
RDPTRRVRVW LGTYDTAEEA AVVYDNAAIQ LRGPNALLNF PPPPPPPVEE EAEETSDFIS  180
SGGGGCLASP VSVLQSPFSG ESTAVKEEFE FPGVSAMVEV KEEPLSTVSG TYTDFSESLF  240
SVDEFFGFPT SMTDCFGGDL FGEDLFTDMS FGSGFGFGSG SGFSSWHVED HFQDLGDLFG  300
SDPLLAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-22100161163ATERF1
3gcc_A7e-22100161163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15256RKRRR
25259RKRRRVKR
35357KRRRV
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001539m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288279.10.0ethylene-responsive transcription factor CRF1
SwissprotO825031e-112CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLR0FFZ10.0R0FFZ1_9BRAS; Uncharacterized protein
STRINGXP_006288279.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-106cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]