PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001525m
Common NameCARUB_v10001525mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 310aa    MW: 32914.4 Da    PI: 7.0339
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001525mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29.4e-091155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +W+ e+d  + +a +    +   +W++Ia+ ++ g++ +q+k+++ 
  Carubv10001525m 11 AWSREDDIAFERALASNTDEseeRWEKIAADVP-GKSVEQIKEHYE 55
                     7*****************99*************.**********95 PP
2Myb_DNA-binding41.92.3e-13119163347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Carubv10001525m 119 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 163
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.672762IPR017884SANT domain
SMARTSM007175.8E-8860IPR001005SANT/Myb domain
CDDcd001674.70E-81158No hitNo description
Gene3DG3DSA:1.10.10.602.2E-41154IPR009057Homeodomain-like
PfamPF002491.0E-71155IPR001005SANT/Myb domain
SuperFamilySSF466893.73E-91265IPR009057Homeodomain-like
PROSITE profilePS5129417.581111168IPR017930Myb domain
SuperFamilySSF466891.29E-16114169IPR009057Homeodomain-like
SMARTSM007173.2E-10116166IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.8E-17116166IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.5E-10119162IPR009057Homeodomain-like
CDDcd001679.51E-10119164No hitNo description
PfamPF002492.9E-11119163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTVEEVSDAS AWSREDDIAF ERALASNTDE SEERWEKIAA DVPGKSVEQI KEHYELLVED  60
VSRIESGCVP LPAYGSPEGS NGHAGDEGGS SKKGGNSHAG ESNQGGKSKS DQERRKGIAW  120
TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH  180
DITSVGNADV STPQGPITGQ NNSTNNNNTS STVVAGGGNK SAKQAVSQPP PGPPMYGTPS  240
IGQPVGGPMV SAVGTPVNLP APPHIAYGVH AAPVPGSGVP GAPMNMGQIP YTLPRTPTAH  300
RFFPTKMTY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1412801179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001525m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529810.0AK352981.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-N01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636975.10.0transcription factor SRM1
SwissprotQ9FNN60.0SRM1_ARATH; Transcription factor SRM1
TrEMBLR0H8E30.0R0H8E3_9BRAS; Uncharacterized protein
STRINGXP_006288282.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-178MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]