PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001498m
Common NameCARUB_v10001498mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 316aa    MW: 36144.1 Da    PI: 6.943
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001498mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.2e-18120172456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  Carubv10001498m 120 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 172
                      4568889*********************************************9 PP

2HD-ZIP_I/II128.33.1e-41118209192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekk+rl+ eqv++LE+sFe  +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++L++el 
  Carubv10001498m 118 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAELV 209
                      69**************************************************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.34E-19110176IPR009057Homeodomain-like
SMARTSM003892.6E-17117178IPR001356Homeobox domain
PROSITE profilePS5007116.552118174IPR001356Homeobox domain
CDDcd000867.84E-16119175No hitNo description
PfamPF000463.3E-15120172IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-19122182IPR009057Homeodomain-like
PRINTSPR000311.2E-5145154IPR000047Helix-turn-helix motif
PROSITE patternPS000270149172IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5154170IPR000047Helix-turn-helix motif
PfamPF021834.6E-15174213IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MYMYEEGRNN ISSNQEGLRL EMAFPQHGFM FQQLHEDNAH HLPSPTSLPS CPPHLFYGGG  60
GGGGNYMMNR SMSFTGVSDH HHNLTQKSPT TTNNMNDQDQ VGEEDNLSDD GSHMMLGEKK  120
KRLNLEQVRA LEKSFELGNK LEPERKMQLA KALGLQPRQI AIWFQNRRAR WKTKQLERDY  180
DSLKKQFDVL KSDNDSLLAH NKKLHAELVA LKKHDRKESA KIKRELAEAS WSNNGSTENN  240
NTSDINHVSM IKDLFPSSIR TATATTTSTH IDQHMVQEQD QGFCNMFNGI DETTSASYWA  300
WPDQQQQHHN HHQFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166174RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001498m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293640.0AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06.
GenBankBT0440590.0BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288253.10.0homeobox-leucine zipper protein HAT7
SwissprotQ004660.0HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLR0FGQ40.0R0FGQ4_9BRAS; Uncharacterized protein
STRINGXP_006288253.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-167homeobox 3