PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001498m | ||||||||
Common Name | CARUB_v10001498mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 316aa MW: 36144.1 Da PI: 6.943 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.2e-18 | 120 | 172 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k Carubv10001498m 120 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 172 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.3 | 3.1e-41 | 118 | 209 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+ eqv++LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++L++el Carubv10001498m 118 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAELV 209 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.34E-19 | 110 | 176 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.6E-17 | 117 | 178 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.552 | 118 | 174 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.84E-16 | 119 | 175 | No hit | No description |
Pfam | PF00046 | 3.3E-15 | 120 | 172 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-19 | 122 | 182 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 145 | 154 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 149 | 172 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 154 | 170 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.6E-15 | 174 | 213 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MYMYEEGRNN ISSNQEGLRL EMAFPQHGFM FQQLHEDNAH HLPSPTSLPS CPPHLFYGGG 60 GGGGNYMMNR SMSFTGVSDH HHNLTQKSPT TTNNMNDQDQ VGEEDNLSDD GSHMMLGEKK 120 KRLNLEQVRA LEKSFELGNK LEPERKMQLA KALGLQPRQI AIWFQNRRAR WKTKQLERDY 180 DSLKKQFDVL KSDNDSLLAH NKKLHAELVA LKKHDRKESA KIKRELAEAS WSNNGSTENN 240 NTSDINHVSM IKDLFPSSIR TATATTTSTH IDQHMVQEQD QGFCNMFNGI DETTSASYWA 300 WPDQQQQHHN HHQFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 174 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001498m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229364 | 0.0 | AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06. | |||
GenBank | BT044059 | 0.0 | BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288253.1 | 0.0 | homeobox-leucine zipper protein HAT7 | ||||
Swissprot | Q00466 | 0.0 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | R0FGQ4 | 0.0 | R0FGQ4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006288253.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3095 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 1e-167 | homeobox 3 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001498m |
Entrez Gene | 17882119 |