PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001458m
Common NameCARUB_v10001458mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 324aa    MW: 35939.2 Da    PI: 7.6161
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001458mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.3e-28143203259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dD y+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+ dp+++e+tY+g+H+++
  Carubv10001458m 143 DDLYSWRKYGQKDILGAKYPRSYYRCTFRntqHCWATKQVQRSDGDPTIFEVTYRGTHTCS 203
                      8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.356137200IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-27138204IPR003657WRKY domain
SuperFamilySSF1182906.8E-25141204IPR003657WRKY domain
SMARTSM007741.5E-38142204IPR003657WRKY domain
PfamPF031063.1E-25143202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAMMSWEQRG LLNELIHGLK AAKQLQASPS PSPSPSPSSS SSSCLTREMK DTLLHQVVSS  60
YENAIMMLNG THNPTTERAT YPMANSGKVP ESPVSITGSP KSEEFLDDGS KDYTLSSKKR  120
KMLPKWTEQV RISPERGLEG PHDDLYSWRK YGQKDILGAK YPRSYYRCTF RNTQHCWATK  180
QVQRSDGDPT IFEVTYRGTH TCSQQGNTPQ LKRETKPNNP IIKTINYQTT LLDSLRTNLT  240
VRTNGLEGEA FSFPVTPPPF YSLDSIHGGG TFRHVGNSCP SDFTGLISTN TSTGSSPIFD  300
VDFHFDPTAE IDAGFPTFLH DSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-181442001874Disease resistance protein RRS1
5w3x_D4e-181442001874Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001458m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288221.10.0probable WRKY transcription factor 41
SwissprotQ8H0Y81e-158WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLR0GW300.0R0GW30_9BRAS; Uncharacterized protein
STRINGXP_006288221.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-159WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]