PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001406m
Common NameCARUB_v10001406mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 332aa    MW: 37939.1 Da    PI: 6.8065
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001406mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3962.5e-3038123184
                      EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f+kvltpsdv+k++rlv+pk++ae++   + + ++++ l ++d++gr W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++
  Carubv10001406m  38 FDKVLTPSDVGKLNRLVIPKQHAENYfplEDN-QNGTVLDFQDRNGRMWRFRYSYWNSSQSYVMTKGWSRFVKDKKLTSGDTVSFHR 123
                      89*********************999**7444.46789***********************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-3833123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-2936123IPR015300DNA-binding pseudobarrel domain
CDDcd100179.89E-2736123No hitNo description
PfamPF023625.9E-2738123IPR003340B3 DNA binding domain
PROSITE profilePS5086314.53638142IPR003340B3 DNA binding domain
SMARTSM010197.6E-2238142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MNMSTMNSEQ ELAENGAGGS GGGDNNYFYT AEMREHMFDK VLTPSDVGKL NRLVIPKQHA  60
ENYFPLEDNQ NGTVLDFQDR NGRMWRFRYS YWNSSQSYVM TKGWSRFVKD KKLTSGDTVS  120
FHRGFIPDDN APERRLKIMF IDWRHRDTHN NYGFGSPPYP TASFYPPPQY PMPLPSYRSF  180
PPFYHNQYQE REYLGYGYGR LVNGGRYYAG TPLDHHHHHQ WSLGRSQPLV YESVPVFPAA  240
RAPPPPPAPP QPPITRRLRL FGVDVEESSP YVETRGEMGV AGHSSSSPVV IGDDDQLSWR  300
LPSGEVDAST SLPMQLSDDE DYKRKGKFSE Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-48341464113B3 domain-containing transcription factor NGA1
5os9_B3e-48341464113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00424DAPTransfer from AT4G01500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001406m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288169.10.0B3 domain-containing transcription factor NGA4
SwissprotO825951e-171NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLR0FFQ70.0R0FFQ7_9BRAS; Uncharacterized protein
STRINGXP_006288169.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-150B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]