PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001372m
Common NameCARUB_v10001372mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 338aa    MW: 38263.2 Da    PI: 9.1239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001372mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.73.8e-56181431128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL+kkv +  +++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++
  Carubv10001372m  18 LPPGFRFHPTDEELISHYLHKKVLDIAFSA-KAIGEVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIYR 110
                      79**************************99.88***************99999***************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++lvg+kktLvfy+grapkg kt+Wvmheyrl
  Carubv10001372m 111 -GKSLVGMKKTLVFYRGRAPKGLKTNWVMHEYRL 143
                      .999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-6414168IPR003441NAC domain
PROSITE profilePS5100559.99918168IPR003441NAC domain
PfamPF023651.8E-2919143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
METFGGFHYK EDDEQMDLPP GFRFHPTDEE LISHYLHKKV LDIAFSAKAI GEVDLNKAEP  60
WELPYKAKMG EKEWYFFCVR DRKYPTGLRT NRATQAGYWK ATGKDKEIYR GKSLVGMKKT  120
LVFYRGRAPK GLKTNWVMHE YRLDGKLSAH NLPKTAKNEW VICRVFHKTA GGKKIPISTL  180
IRIGSYGTGS SLPPLTDSST YNDKTKTELV YVPCFSNQAE TRGTTILNCF NNSSLSSIQP  240
DFLQMIPLYQ PQYSLNVSDN LQGSSPALTQ DQSALQAMME NNKRQSFKTL NISQETGAAS  300
NTDNTSSVFE FGRKRFDHQE VPSSSAGPID LEPFWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-561517417174NAC domain-containing protein 19
3swm_B8e-561517417174NAC domain-containing protein 19
3swm_C8e-561517417174NAC domain-containing protein 19
3swm_D8e-561517417174NAC domain-containing protein 19
3swp_A8e-561517417174NAC domain-containing protein 19
3swp_B8e-561517417174NAC domain-containing protein 19
3swp_C8e-561517417174NAC domain-containing protein 19
3swp_D8e-561517417174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00496DAPTransfer from AT5G07680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001372m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2280270.0AK228027.1 Arabidopsis thaliana mRNA for no apical meristem (NAM) -like protein, complete cds, clone: RAFL14-54-D06.
GenBankBT0064190.0BT006419.1 Arabidopsis thaliana At5g07680 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288140.10.0NAC domain-containing protein 79
SwissprotQ9FLR30.0NAC79_ARATH; NAC domain-containing protein 79
TrEMBLR0HBK30.0R0HBK3_9BRAS; Uncharacterized protein
STRINGXP_006288140.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.10.0NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]