PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001360m
Common NameCARUB_v10001360mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 341aa    MW: 37386.4 Da    PI: 5.2314
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001360mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.5e-18230264135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Carubv10001360m 230 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 264
                      99*****************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.7E-781318IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.635224260IPR000679Zinc finger, GATA-type
SMARTSM004018.7E-18224274IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-16226288No hitNo description
Gene3DG3DSA:3.30.50.102.3E-14228262IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.74E-14229276No hitNo description
PfamPF003201.2E-15230264IPR000679Zinc finger, GATA-type
PROSITE patternPS003440230255IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEDEAHEFFH AADHFAVDDL LVDFSNDDDD EENDVLADST TTTTTTTALT DSSSVSALDL  60
PNFSCDVHDG TSFSGDLCVP CDDLADELAW LSNIVDESFS PEDVQKLQLI SGFKTRPEPK  120
SESCSLDNPN STSPIFTTDV SVPAKARSKR SRAGTCNWAS RGLLTETVYD NPFTGETILS  180
SHNLSPPTSP PPPPPMAQVA KKQAIGGDGG YRRKKDVSSP ESCGAEERRC LHCATDKTPQ  240
WRTGPMGPKT LCNACGVRYK SGRLVPEYRP AASPTFVLTK HSNSHRKVME LRRQKEMSKA  300
HHEFIHHHHG TDTAMILDVS SESDDYLIHH KVGPDFRQLI *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001360m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288129.10.0GATA transcription factor 12
SwissprotP697810.0GAT12_ARATH; GATA transcription factor 12
TrEMBLR0FFM60.0R0FFM6_9BRAS; GATA transcription factor
STRINGXP_006288129.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-159GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]