PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001360m | ||||||||
Common Name | CARUB_v10001360mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GATA | ||||||||
Protein Properties | Length: 341aa MW: 37386.4 Da PI: 5.2314 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.2 | 9.5e-18 | 230 | 264 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Carubv10001360m 230 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 264 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 5.7E-78 | 1 | 318 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.635 | 224 | 260 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 8.7E-18 | 224 | 274 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-16 | 226 | 288 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-14 | 228 | 262 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.74E-14 | 229 | 276 | No hit | No description |
Pfam | PF00320 | 1.2E-15 | 230 | 264 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 230 | 255 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MEDEAHEFFH AADHFAVDDL LVDFSNDDDD EENDVLADST TTTTTTTALT DSSSVSALDL 60 PNFSCDVHDG TSFSGDLCVP CDDLADELAW LSNIVDESFS PEDVQKLQLI SGFKTRPEPK 120 SESCSLDNPN STSPIFTTDV SVPAKARSKR SRAGTCNWAS RGLLTETVYD NPFTGETILS 180 SHNLSPPTSP PPPPPMAQVA KKQAIGGDGG YRRKKDVSSP ESCGAEERRC LHCATDKTPQ 240 WRTGPMGPKT LCNACGVRYK SGRLVPEYRP AASPTFVLTK HSNSHRKVME LRRQKEMSKA 300 HHEFIHHHHG TDTAMILDVS SESDDYLIHH KVGPDFRQLI * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00530 | DAP | Transfer from AT5G25830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001360m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288129.1 | 0.0 | GATA transcription factor 12 | ||||
Swissprot | P69781 | 0.0 | GAT12_ARATH; GATA transcription factor 12 | ||||
TrEMBL | R0FFM6 | 0.0 | R0FFM6_9BRAS; GATA transcription factor | ||||
STRING | XP_006288129.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6625 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 1e-159 | GATA transcription factor 12 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001360m |
Entrez Gene | 17881264 |
Publications ? help Back to Top | |||
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