PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001356m
Common NameCARUB_v10001356mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 341aa    MW: 37771.4 Da    PI: 8.3938
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001356mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.4e-18186240256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Carubv10001356m 186 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 240
                      678899***********************************************98 PP
2HD-ZIP_I/II128.13.7e-41186275191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Carubv10001356m 186 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLKKEVKELR-TL 275
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-18164243IPR009057Homeodomain-like
SuperFamilySSF466892.55E-18176243IPR009057Homeodomain-like
PROSITE profilePS5007116.989182242IPR001356Homeobox domain
SMARTSM003891.5E-16184246IPR001356Homeobox domain
CDDcd000869.39E-16186243No hitNo description
PfamPF000462.3E-15186240IPR001356Homeobox domain
PROSITE patternPS000270217240IPR017970Homeobox, conserved site
SMARTSM003402.9E-25242285IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-10242275IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MELALSLGDN TKKQFSFLEK HSKIHNPAAS STSTSDKDLG FCMGLDVAFG GHRSLSSSSS  60
PSVEDAKKKP ALLSNISDGF RVSSSVDPPL QLQLHFPNWL PDNSQQGGRI LSGVATVVAE  120
EEEEAVPSMS VSPPNSVTSS FQLDFGIKSY GYERRSNKRD IDDEVERSAS RACSNEDNDD  180
ENGSTRKKLR LSKDQSAFLE DSFKEHSTLN PKQKIALAKQ LNLRPRQVEV WFQNRRARTK  240
LKQTEVDCEY LKRCCESLTE ENRRLKKEVK ELRTLKTSTP FYMQLPATTL TMCPSCERVA  300
TSATQQPTTT SAPQNLGLST STLHCPLIPD VKPRPAKQVS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184190TRKKLRL
2234242RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001356m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4311820.0AJ431182.2 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT14 (hat14 gene).
GenBankAK2274230.0AK227423.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL14-07-H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288124.10.0homeobox-leucine zipper protein HAT14
SwissprotP466650.0HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLR0FFM30.0R0FFM3_9BRAS; Uncharacterized protein
STRINGXP_006288124.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-174homeobox from Arabidopsis thaliana