PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001247m
Common NameCARUB_v10001247mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 362aa    MW: 38959 Da    PI: 9.1572
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001247mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.37e-23247310164
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                      eke+kre+rkq+NRe+ArrsR+RK+ae+e+L+ kv++L aeN++L++++++l++e++kl+ e+e
  Carubv10001247m 247 EKEVKREKRKQSNRESARRSRLRKQAETEQLAVKVDALVAENMTLRSKVSQLNDESEKLRLENE 310
                      89*********************************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.0E-31195IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.9E-15129228No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-16244306No hitNo description
SMARTSM003389.5E-20247311IPR004827Basic-leucine zipper domain
PfamPF001709.4E-22247309IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.771249312IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-11250306No hitNo description
CDDcd147021.13E-20252301No hitNo description
PROSITE patternPS000360254269IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGSNEEGNTK NSDKPSQAAL VTEQSNVHVY HHDWAAMQAY YGPRVAIPQY YNSNVANGHA  60
PPPYMWASPS PMMAPYGAPY PPFCPPGGVY AHPGVQMGSQ PQGPVSQAPP GVTTPLAMDA  120
PANSSGNTDH GFMKKLKEFD GLAMSISNNK VGSAEHSSSE HRSSQSSEND GSSNGSDGNT  180
TGGEQSKRKR RRERSPSTGE KHSSQTTPPL RGENAKPDMT MGTPVIPTAM DFQNSAGING  240
IPQTWNEKEV KREKRKQSNR ESARRSRLRK QAETEQLAVK VDALVAENMT LRSKVSQLND  300
ESEKLRLENE ALLDQLKAQA TGKTENLISR VDKNNSVSSG GKNVQHQLIN ASPISDPVAA  360
S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191KRKRRR
2187191RKRRR
3263269RRSRLRK
4263270RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001247m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0626670.0AY062667.1 Arabidopsis thaliana Unknown protein (GBF2) mRNA, complete cds.
GenBankAY0933160.0AY093316.1 Arabidopsis thaliana unknown protein (GBF2) mRNA, complete cds.
GenBankX638950.0X63895.1 A.thaliana mRNA GBF2 for G-box binding factor 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288014.10.0G-box-binding factor 2
SwissprotP427750.0GBF2_ARATH; G-box-binding factor 2
TrEMBLR0FFA00.0R0FFA0_9BRAS; Uncharacterized protein
STRINGXP_006288014.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.11e-178G-box binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li B, et al.
    Promoter-based integration in plant defense regulation.
    Plant Physiol., 2014. 166(4): p. 1803-20
    [PMID:25352272]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]