PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001230m
Common NameCARUB_v10001230mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 366aa    MW: 39164.5 Da    PI: 5.4559
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001230mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.6e-07436436
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                     + C+ +++  + l+C+ +  +lC +C ++ H  
  Carubv10001230m  4 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAA 36
                     58***************************9954 PP
2zf-B_box27.47.1e-094691342
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Carubv10001230m 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                     689*****************************66899999*99986 PP
3CCT706.2e-24298341144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Carubv10001230m 298 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 341
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.438148IPR000315B-box-type zinc finger
PfamPF006433.2E-5443IPR000315B-box-type zinc finger
CDDcd000211.08E-8548No hitNo description
PROSITE profilePS5011910.8934491IPR000315B-box-type zinc finger
PfamPF006433.5E-74691IPR000315B-box-type zinc finger
CDDcd000211.25E-94791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.767298340IPR010402CCT domain
PfamPF062037.2E-18298340IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS DGSVKHTAVN FLDDCYFSDL  120
AGNGSREEEE EEAASWLLLP NPKASAATAT TTTAMVAGTA AEEVPGDSPE MNTGQQYLFS  180
DPDPYLDLDY GNVDPKVESL EQNSSGTDGV VPVENRTVRV PTVNENCYEL DFTGGSKGFA  240
YGGGYNCISH SVSSSSLEVG VVPDGGSVAD VSYPYGGPAT SGADPGSQKA VPLTSAEREA  300
RVMRYREKRK NRKFEKTIRY ASRKAYAEMR PRIKGRFAKR TDTSESNDAV GHGGIFSGFG  360
LVPTF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001230m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937570.0AB493757.1 Arabidopsis thaliana At5g24930 mRNA for hypothetical protein, partial cds, clone: RAAt5g24930.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287997.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T90.0COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLR0H7Q30.0R0H7Q3_9BRAS; Uncharacterized protein
STRINGXP_006287997.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.10.0CONSTANS-like 4