PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001212m | ||||||||
Common Name | CARUB_v10001212mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NF-YC | ||||||||
Protein Properties | Length: 371aa MW: 42133.7 Da PI: 5.751 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 56.6 | 5.7e-18 | 85 | 165 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + + +t+ ++++v+r ++fdfl ++v + Carubv10001212m 85 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTVSSLHLKNCVERYNVFDFLREVVSK 165 678*************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.2E-25 | 82 | 151 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.82E-19 | 83 | 178 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.1E-19 | 87 | 150 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
IWFLLLLFVC GHPPPNSLVF HFIQKINEYS LLYKELICPL ISNLKDFSLR VVSIYPETIS 60 SPLSLSSFQA FLCDPNKSLM RKKLDTRFPA ARIKKIMQAD EDVGKIALAV PVLVSKALEL 120 FLQDLCDHTY EITLQRGAKT VSSLHLKNCV ERYNVFDFLR EVVSKVPDYG HGHGHSQGHA 180 DVAMDDRNIS KRRKPQDDEI NDSDEDLKKT KVHEMGHAGP SGRGRGRGRG RGRGRSAKTA 240 ERELFHREME IEPTILVAPQ LTQEEIKMHA PPQQHGSEKK DVDERFNHTK QELESPDDTN 300 SGLGRGFDLN TQSLDIEIKP PVITASREEM KPEEYPCWSI PDMANIDPMQ VANMSKRLDE 360 DEEDYDEEES * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 4e-20 | 81 | 151 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 224 | 233 | RGRGRGRGRG |
2 | 224 | 234 | RGRGRGRGRGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001212m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006287977.2 | 0.0 | dr1-associated corepressor | ||||
TrEMBL | R0H7M7 | 0.0 | R0H7M7_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006287977.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3506 | 24 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 8e-99 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001212m |
Entrez Gene | 17881808 |