PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001204m
Common NameCARUB_v10001204mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 373aa    MW: 39191.4 Da    PI: 4.4746
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001204mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.1e-36601522103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+ ++elisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk+g+k ll+
  Carubv10001204m  60 FLTKTYQLVDDPVYDELISWNDDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFKRGEKILLR 144
                      9*****************************************************************99.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k +
  Carubv10001204m 145 DIQRRKIS 152
                      *****865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-5856149IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-3757149IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.52E-3457149IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.9E-206083IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3160149IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-2098110IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434099123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-20111123IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1706.3E-5226253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MPGEQTGESP TVAGVGGGGA GCSAGNSGGS SGCGAGGGGS GGGGGGGGGG DSQRSIPTPF  60
LTKTYQLVDD PVYDELISWN DDGTTFIVWR PAEFARDLLP KYFKHNNFSS FVRQLNTYGF  120
RKVVPDRWEF SNDCFKRGEK ILLRDIQRRK ISQPAMAAAA AAAAAAVAAS AVTVAAAPVV  180
AHAVSPSNSG EEQVISSNSS PAAAAAATGV VGVGLQRTTS CTTAPELVEE NERLRKENRQ  240
LSQELTKLKG LYANIYTLMA NFTPGQADCA NLLPEGRPLD LLPEKQGMTE DIGIDTGIGL  300
KLDEDLTPRL FGVSIGVKRA RREEELGVEE EEDDDRQEAV TREGEQSSDL KAEPMEENNS  360
SNHDGPWLEL GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-27291491129Heat shock factor protein 1
5d5v_B2e-27291491129Heat shock factor protein 1
5d5v_D2e-27291491129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001204m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0932060.0AY093206.1 Arabidopsis thaliana heat shock transcription factor-like protein (At4g11660) mRNA, complete cds.
GenBankBT0084710.0BT008471.1 Arabidopsis thaliana At4g11660 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287969.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-174HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLR0FF520.0R0FF52_9BRAS; Uncharacterized protein
STRINGCagra.1912s0005.1.p0.0(Capsella grandiflora)
STRINGXP_006287969.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-161HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]