PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001164m
Common NameCARUB_v10001164mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family E2F/DP
Protein Properties Length: 384aa    MW: 42197.5 Da    PI: 5.5969
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001164mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.52e-27105187271
          E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Carubv10001164m 105 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfalpnndgtspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 187
                      689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094046.7E-1364383IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.5E-46100193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-35104187IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.3E-25106187IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-21107188IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.34E-41192295IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.33E-41194338No hitNo description
SMARTSM011381.1E-62194342IPR014889Transcription factor DP, C-terminal
PfamPF087816.4E-42195312IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MTTGSNSNHN NHEDGSGKSN SNNNNNPSTR SWGTAVSGQS VSTSGSMGSP SSRSELAITV  60
ATSASDSTFL RLNNLDIQGD DAASQGASGG KKKKRGQRAA GPDKSGRGLR QFSMKVCEKV  120
ESKGRTTYNE VADELVAEFA LPNNDGTSPD QQQYDEKNIR RRVYDALNVL MAMDIISKDK  180
KEIQWRGLPR TSLSDIEELK TERLSLRNRI EKKTTYSQEL EEQYVGLQNL IQRNEHLYSS  240
GNAPSGGVAL PFILVQTRPH ATVEVEISED MQLVHFDFNT TPFELHDDNF VLKTMQFCNQ  300
PPQQPNGHNS QILALENTNE VPSAGPTTQP DMYQSHLQPQ QHQLQIIPTP VTNEVASATD  360
TDPVVLPSHS HPEIMNSIVK PEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-3798192193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001164m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636453.10.0transcription factor-like protein DPB isoform X1
RefseqXP_023636454.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY20.0DPB_ARATH; Transcription factor-like protein DPB
TrEMBLR0FF130.0R0FF13_9BRAS; Uncharacterized protein
STRINGXP_006287929.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-177Transcription factor DP