PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001148m | ||||||||
Common Name | CARUB_v10001129mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 391aa MW: 43803.7 Da PI: 6.2024 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.3 | 8.1e-34 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG +kAtPkti+++m+++gLtl+h+kSHLQkYRl Carubv10001148m 45 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.155 | 42 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-32 | 43 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-17 | 44 | 100 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.3E-24 | 45 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-10 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.0E-15 | 146 | 186 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MYYHNQHQGK SILSSSRMPI TSERHPFLRG NGTGDSGLIL STDAKPRLKW TPDLHERFVE 60 AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQASSS LNKTSVMTMV 120 EENLPEADEG HSESLSIGPQ PSMNLPISDA LQMQIEVQRR LHEQLELRIE AQGKYLQSIL 180 EKAQETLGRQ NLGAAGIEAT KAQLSELVSK VSAEYPDSSF LEAHQQMQTT YPPNSSLDSC 240 LTSSEGTQKA PKMRENRLGL RTYIGDSTSE QKEVMEEPFF RRMELTWAEE ESLRENNNRP 300 YLSTMVNNTE PRNSSSRRSP GRLSMGVGLH EHREGSGNNS EYAEERFSEN GEDCKLETHT 360 GTTLDLNTHD ENYGTTTRPK QFDLNGFSWN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-21 | 45 | 101 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-21 | 45 | 101 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-21 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-21 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-21 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-21 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-21 | 45 | 101 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-21 | 45 | 101 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-21 | 45 | 101 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-21 | 45 | 101 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-21 | 45 | 101 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-21 | 45 | 101 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001148m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF291817 | 0.0 | AF291817.1 Arabidopsis thaliana MYR1 (MYR1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023636836.1 | 0.0 | myb-related protein 1 isoform X3 | ||||
Swissprot | Q9FK47 | 0.0 | PHLA_ARATH; Myb-related protein 1 | ||||
TrEMBL | R0HAX9 | 0.0 | R0HAX9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006287896.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18240.3 | 0.0 | myb-related protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001148m |
Entrez Gene | 17881625 |
Publications ? help Back to Top | |||
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