PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001129m | ||||||||
Common Name | CARUB_v10001129mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 397aa MW: 44565.6 Da PI: 6.4017 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.3 | 8.3e-34 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG +kAtPkti+++m+++gLtl+h+kSHLQkYRl Carubv10001129m 45 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.155 | 42 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-32 | 43 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-17 | 44 | 100 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.4E-24 | 45 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-10 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.0E-25 | 146 | 192 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MYYHNQHQGK SILSSSRMPI TSERHPFLRG NGTGDSGLIL STDAKPRLKW TPDLHERFVE 60 AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQASSS LNKTSVMTMV 120 EENLPEADEG HSESLSIGPQ PSMNLPISDA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK 180 YLQSILEKAQ ETLGRQNLGA AGIEATKAQL SELVSKVSAE YPDSSFLEAH QQMQTTYPPN 240 SSLDSCLTSS EGTQKAPKMR ENRLGLRTYI GDSTSEQKEV MEEPFFRRME LTWAEEESLR 300 ENNNRPYLST MVNNTEPRNS SSRRSPGRLS MGVGLHEHRE GSGNNSEYAE ERFSENGEDC 360 KLETHTGTTL DLNTHDENYG TTTRPKQFDL NGFSWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-21 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-21 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-21 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-21 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001129m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY042878 | 0.0 | AY042878.1 Arabidopsis thaliana transfactor-like protein (MRG7.19) mRNA, complete cds. | |||
GenBank | BT003421 | 0.0 | BT003421.1 Arabidopsis thaliana transfactor-like protein (At5g18240) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023636833.1 | 0.0 | myb-related protein 1 isoform X1 | ||||
Refseq | XP_023636834.1 | 0.0 | myb-related protein 1 isoform X1 | ||||
Swissprot | Q9FK47 | 0.0 | PHLA_ARATH; Myb-related protein 1 | ||||
TrEMBL | R0GV47 | 0.0 | R0GV47_9BRAS; Uncharacterized protein | ||||
STRING | XP_006287896.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3336 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18240.4 | 0.0 | myb-related protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001129m |
Entrez Gene | 17881625 |
Publications ? help Back to Top | |||
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