PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001121m
Common NameCARUB_v10001121mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 400aa    MW: 42652.8 Da    PI: 9.3656
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001121mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.85e-3886145362
           zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      e+alkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+++
  Carubv10001121m  86 ETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKSCRRYWTRGGALRSVPVGGGCRRNKRTK 145
                      6789*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-3969143IPR003851Zinc finger, Dof-type
PfamPF027014.5E-3288143IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4589143IPR003851Zinc finger, Dof-type
PROSITE patternPS01361091127IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MVFSSFPSYP DSSNWQQQHQ PITTTVGFTG NNINQQFLPH HPLPPQQQQT PPQLHHNNNG  60
NGGPGVLIRP GSMAERARLA NIPLPETALK CPRCDSTNTK FCYFNNYSLT QPRHFCKSCR  120
RYWTRGGALR SVPVGGGCRR NKRTKNSSGG GGGSSSSGNS KSQDSTTSND QYHHRAMASN  180
QMGPPSSSSS LSSLLSSYNA GLIPGHDHNN SNNNNNILGL GSSLPPLKLM PPLDFTDNFT  240
LQYGAVSAPS YHIGSGSNGG SGGAAALLTG FDQWRFPATN QLPLGGLDPF DHQHQMEHQN  300
PGYGLVTGSG QYRPKNMFHS LISSSSSASS AMVTATASQL ASVKMEDSNN QLNLSRQLFG  360
NEQQLWNIHG AAVASTPAAA TSSWSDVSNN FSSSSTSNI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Binds to 5'-TAAAGT-3' motif in REV promoter to triggers its transcription, thus regulating adaxial-abaxial polarity and influencing leaf axial patterning in an auxin transport- and response-dependent manner (e.g. IAA6 and IAA19 genes expression) (PubMed:20807212). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:17583520, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:30626969}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00483DAPTransfer from AT5G02460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001121m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin in procambium. {ECO:0000269|PubMed:30626969}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937310.0AB493731.1 Arabidopsis thaliana At5g02460 mRNA for hypothetical protein, partial cds, clone: RAAt5g02460.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287887.10.0dof zinc finger protein DOF5.1
SwissprotQ9LZ560.0DOF51_ARATH; Dof zinc finger protein DOF5.1
TrEMBLR0H7D70.0R0H7D7_9BRAS; Uncharacterized protein
STRINGXP_006287887.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115191732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.11e-159Dof family protein
Publications ? help Back to Top
  1. Miyashima S, et al.
    Mobile PEAR transcription factors integrate positional cues to prime cambial growth.
    Nature, 2019. 565(7740): p. 490-494
    [PMID:30626969]