PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001064m
Common NameCARUB_v10001064mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 417aa    MW: 47089.2 Da    PI: 5.3328
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001064mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17e-32234288155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++ + Lt++hvkSHLQkYR+
  Carubv10001064m 234 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPVLTIYHVKSHLQKYRT 288
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-16232288IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-29232290IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-22234288IPR006447Myb domain, plants
PfamPF002492.7E-9236287IPR001005SANT/Myb domain
PfamPF143799.1E-22322368IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MTLANDFGYT TAMSSSFSAL HTTVEDRYRK LPNSFWLSSG QELMNNPVPC QSVSGDNSGG  60
YLFSSSSGFC NVSAVSPHGR NLQTQSPVST VPRDRFAMQD LPLEAQPSSL INHHQPQEFT  120
DPLQEFFDFS DHIPVQSLQA EQSSGVRVDT SVELNNRSEW QDWADQLISA DDGSEPNWSE  180
LLGDPSSHNP NSEIPTPFSN VPRQEMKANQ QHQMVFSEEQ LSGRNSSSSV ATSKQRMRWT  240
PELHEAFVEA VNQLGGSERA TPKAVLKLLN NPVLTIYHVK SHLQKYRTAR YKPETSEVTG  300
EPQEKKMTSM EDIKSLDMKT SVEITQALRL QMEVQKRLHE QLEIQRTLQL QIEKQGRYLQ  360
MMFEKQQKIQ ENKSLSPEES PKQCNTTSAE VEFGLETRTD DRTESASASR KRVREN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-27234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-27234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-27234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-27234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-27234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-27234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-27234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-27234292260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001064m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0023440.0BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287842.10.0protein PHR1-LIKE 1 isoform X1
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLR0H7990.0R0H799_9BRAS; Uncharacterized protein
STRINGXP_006287842.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.20.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]