PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001022m
Common NameCARUB_v10001022mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 428aa    MW: 46730.2 Da    PI: 4.7921
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001022mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731192.6e-37121219298
           DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      lfqrlw++eDei lL+G++d+ ++++g s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +f++s+
  Carubv10001022m 121 LFQRLWTDEDEIELLRGFLDYiTNHRGNSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQATFDISR 214
                      79*******************9999**999999************************************************************* PP

           DUF573  94 kiWgs 98 
                      kiW++
  Carubv10001022m 215 KIWNQ 219
                      ***85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.3E-34122218IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MASDQRDTVF SVESPDLDDG GGGGGGGGGE TESDEDVVIP EQNDVEEDDP EYEDLNSPSM  60
VSAISTAPSV IKSSSSTGTV TVALPAGSVP VASIPSDSDQ KWHRMTEIVH QRPPIDDSRR  120
LFQRLWTDED EIELLRGFLD YITNHRGNSS HPPDTAPFYE QIKSKLQLEF NKNQLVEKLR  180
RLKKKYRNVM SKISSGKEVF FKSPHDQATF DISRKIWNQT GKIIGFEDNN VMDFEESNHV  240
NNHNTNGGGS GFNISIANAS VDVDLENGME KKVTMSRKRS RSRIGKIDED KPILAPCDGG  300
LPNAVNLNEN VAAVGDFIDG RNLGGLIEET VKNCVSPMIK EMMNGRTGMM MAAMGGFPGG  360
GGTHGLGVLS PMLIPSMNQG FGGKGAGDER WRRQQILELE VYSRRLELVQ EQIRATVNEL  420
KTMPSGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277282KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001022m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636557.10.0probable transcription factor At5g28040
SwissprotF4K5T40.0STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLR0H7660.0R0H766_9BRAS; Uncharacterized protein
STRINGXP_006287807.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.10.0DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]