PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001008m
Common NameCARUB_v10001008mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 432aa    MW: 47553.8 Da    PI: 9.8663
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001008mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-05119141123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+k F r  nL+ H r H
  Carubv10001008m 119 FVCEICNKGFQRDQNLQLHRRGH 141
                      89*******************88 PP
2zf-C2H212.70.00038196218123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H + +
  Carubv10001008m 196 WKCEKCSKFYAVQSDWKAHTKIC 218
                      58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.93E-6118141No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5118141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949119141IPR007087Zinc finger, C2H2
SMARTSM003550.017119141IPR015880Zinc finger, C2H2-like
PfamPF121716.7E-5119141IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
SuperFamilySSF576673.93E-6191216No hitNo description
SMARTSM00355180196216IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
NKPKFGSFLS FLPKFCFFFG WSFLLPLSYN HAMANMFLSH SLSYKLSSLS TEASASSGNT  60
LISSTIQDFS GFNHAISSLS THTETHKIAK KRRGLPGNPD PDAEVIALSP KTLLATNRFV  120
CEICNKGFQR DQNLQLHRRG HNLPWKLKQK SSKEQQRKKV YVCPETSCAH HHPSRALGDL  180
TGIKKHFCRK HGEKKWKCEK CSKFYAVQSD WKAHTKICGT REYRCDCGTL FSRKDSFITH  240
RAFCDALAEE SARIHSTSSS SILTNPNPNH FMINKSSPLF FTSPLCVEPS HSAAALSSTA  300
ALSATALLQK ATALSSSAFG GGGQTRSIGH QRHHLTKNAN ELLGGVDRVM MTSSEYDQLA  360
STWQKADRLT RDFLGLTGHG VHVSMRPGGV LGYAGGVAFP MSAYDTESHH NHESSSFQKA  420
YDLGFSGAHS M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35192261372Zinc finger protein JACKDAW
5b3h_F3e-35192261372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145158KLKQKSSKEQQRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001008m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936720.0AB493672.1 Arabidopsis thaliana At4g02670 mRNA for hypothetical protein, partial cds, clone: RAAt4g02670.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287797.20.0protein indeterminate-domain 12
SwissprotO227590.0IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLR0H7560.0R0H756_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006287797.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.10.0indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]