PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10000809m | ||||||||
Common Name | CARUB_v10000809mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 494aa MW: 54313.8 Da PI: 6.1985 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.7 | 3.7e-31 | 243 | 302 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ Carubv10000809m 243 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQVQRCAEDTTILTTTYEGNHNHP 302 58*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.9E-33 | 228 | 304 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-28 | 236 | 304 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.862 | 238 | 304 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-37 | 243 | 303 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 244 | 302 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MDEHTQDPRE IAFLHSGEFP RGDFDSKDHQ PDESSEEHLH DESSSIKEVD FFSPKSQPYD 60 DIGQVRTTII VGSSGFNDNL GMVNLCHGTS SDDGDDKTKT KTQIIRLKLE LERLHEENHK 120 LRHLLDEISQ SYNDLQRRVL LVRQTQVEGL HKQHEDTTQA GSSQALEDRR PKHMNNEISA 180 TTLKRLSPED EDDRDDMHRG SPKTPRLDQN KSANHEEQQN PHDQLPFRKA RVSVRARSDA 240 TTVNDGCQWR KYGQKMAKGN PCPRAYYRCT MAIGCPVRKQ VQRCAEDTTI LTTTYEGNHN 300 HPLPPSATAM AATTSAAAAM LLSGSSTSNI HQTLSSPSAA SSSSFYHNFP YTSTIATLSA 360 SAPFPTITLD LTNPPRPLQP PQQFLSQYGP AAFLPNANQI RSINNNNNNN NAQLLLPNLL 420 GPQAALPRDM VDSVRAAIAM DPNFTAALAA AISNIIGGGN NDNNDINNNK VDGASSNGDS 480 PQLPQSCTTF STN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-22 | 230 | 305 | 1 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00115 | ampDAP | Transfer from AT4G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10000809m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006287597.1 | 0.0 | probable WRKY transcription factor 47 isoform X1 | ||||
Swissprot | Q9ZSI7 | 0.0 | WRK47_ARATH; Probable WRKY transcription factor 47 | ||||
TrEMBL | R0H6P4 | 0.0 | R0H6P4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006287597.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7156 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01720.1 | 0.0 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10000809m |
Entrez Gene | 17882899 |