PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10000703m
Common NameCARUB_v10000703mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 526aa    MW: 57726.9 Da    PI: 6.7208
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10000703mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30291349259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+  gCpv+k+v+r+aed +++++tYeg+Hnh+
  Carubv10000703m 291 SDGCQWRKYGQKMAKGNPCPRAYYRCTMVnGCPVRKQVQRCAEDRTILITTYEGNHNHP 349
                      7***************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-34275351IPR003657WRKY domain
SuperFamilySSF1182907.06E-28283351IPR003657WRKY domain
PROSITE profilePS5081129.769285351IPR003657WRKY domain
SMARTSM007741.4E-36290350IPR003657WRKY domain
PfamPF031061.8E-26292349IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MFRFPVSLGG GPRDNTKQSD EQQHHRAVVD EVDFFRSAEK RDRVARDEQN IITDDETHMV  60
HVKREINSRV DDHHDDRSTD HINIGLNLLT ANTGSDESMV DDGLSVDMEE KRTKCENVQL  120
REELKKASED NQRLKEMLSQ TTKNFNSLQM QLVAVMRQQE EDHHHLATTE NKDNAKSRHE  180
VPEMVPRQFI DLGPPSDEAS SEERTTVRSG SPPSLLEKSS PRQNGKRALA REESPETESN  240
GWRTPNKVPK HHASSSNGNG NNNVIEQSTA EATMRKARVS VRARSEAPML SDGCQWRKYG  300
QKMAKGNPCP RAYYRCTMVN GCPVRKQVQR CAEDRTILIT TYEGNHNHPL PPAAMSMAST  360
TTAAASMLLS GSTMSSQDGL MNPTNLLART MLPCSSSMAT ISASAPFPTI TLDLTESPNG  420
NNLTNNPLMQ FSQRSGFAEL NQSVLPQMMG QALYYNQQSK FSGLHMPSQS LNAGESVSAA  480
TAAIASNPNF AAALAAAITS IINGSNNQQN NGSSNNSNVT TSNGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21277353176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10000703m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287494.10.0WRKY transcription factor 42
SwissprotQ9XEC30.0WRK42_ARATH; WRKY transcription factor 42
TrEMBLR0FDY10.0R0FDY1_9BRAS; Uncharacterized protein
STRINGXP_006287494.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.10.0WRKY family protein