PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10000655m | ||||||||
Common Name | CARUB_v10000655mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 542aa MW: 59916.7 Da PI: 7.1473 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.5 | 9.9e-18 | 285 | 334 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq Carubv10000655m 285 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 334 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-23 | 282 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.225 | 283 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-19 | 284 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.99E-15 | 285 | 336 | No hit | No description |
Pfam | PF00010 | 3.3E-15 | 285 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-13 | 289 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 542 aa Download sequence Send to blast |
MELPQPRPFK TEGRKPTHDF LSLCSHSTVH PDPTKLTPPS SQGSHLKTHD FLQPLECVGA 60 KEEITRINTT TTASEKPPPP APPPPLQHVL PGGIGTYTIS PIPYFHHHHQ RVPKPELSPP 120 MMFTTAAQAT GGNERIAVDD NSNSNCSSYA AAASGFTLWD ESASGMKGQT RKENNVGERA 180 NMRADVATTV GQWPVVERRS QSLTNNHMSG FSSRSSSQGS GLKSQSFMDM IRSAKGSSQD 240 DDLDDEEDFI MKKESSSTSQ SHRVDLRVKA DVRGSGNDQK LNTPRSKHSA TEQRRRSKIN 300 DRFQMLRQLI PNSDQKRDKA SFLLEVIEYI QFLQEKADKY ETSYQGWNHE PAKLLNWRNN 360 QQLVPEGTVA FAPKLEEEKN NVPVPVLATA QGVAIDHLIT ATTSPFPLSI QNNSFFSPVI 420 AGNPVPQFHT RVASSEAVEP NPSSRSQTQP LKEEEEVEDE EILEGNISIS SVYSQGLVKT 480 LREALENSGV DLTKASISVE IELAKQSSSS FKDHEVRGPV SRTRNEDVKQ TRKPKRLKTG 540 Q* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10000655m |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353313 | 0.0 | AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023636603.1 | 0.0 | transcription factor BIM1 isoform X2 | ||||
Swissprot | Q9LEZ3 | 0.0 | BIM1_ARATH; Transcription factor BIM1 | ||||
TrEMBL | R0FDU1 | 0.0 | R0FDU1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006287449.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6967 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G08130.4 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10000655m |
Entrez Gene | 17881226 |
Publications ? help Back to Top | |||
---|---|---|---|
|