PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10000606m | ||||||||
Common Name | CARUB_v10000606mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 559aa MW: 60182.2 Da PI: 7.0357 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.6 | 6.9e-30 | 235 | 294 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+ Carubv10000606m 235 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHP 294 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-31 | 220 | 296 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-27 | 228 | 296 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.69 | 230 | 296 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.3E-37 | 235 | 295 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-27 | 236 | 294 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MEVLLKLPIS DSPLKDKVFG SVQIHEATKG DSDDHQELES AKAEMSEVKE ENEKLKGMLE 60 RIESDYKSLK LRFFDIIQQE PSNNPSQSQN MVDHRKPTTT DLSSFDQERE LVSLSLGRRS 120 SSPSNSISKK EEKDAKSAES NADKELTKAG LTLGINNGDG RESNMSLSIE NPANSSLENS 180 TEEAPGESWP PSKVTGKRSS PTPAPGGDVD GEAGQQNHVK RARVCVRARC DTPTMNDGCQ 240 WRKYGQKIAK GNPCPRAYYR CTVAPGCPVR KQVQRCADDM SILITTYEGT HSHPLPLSAT 300 TMASTTSAAA SMLLSGSSSS SAAEMVGNNL YDNSRFNNNN NNKSFYSPTL HSPLHPTVTL 360 DLTAPQHPSS SSLPSLNFNK FSNSFQRFPP TSLNFSSNAS SSSSNSSNLN LPAIWGNGYS 420 SYTPYPYNNV QFGTSSLGKT VQNSQSLTET LTKALTSDPS FHSVIAAAIS TMVGSNGEQQ 480 IAGPRNLNSN NIQQTTTTNN NKGCGGYFSS LLMSNIMASN QTGASSDQPS SQLPPFSMFK 540 NSSSSSSTTS FANKDEKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-21 | 222 | 296 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10000606m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006287400.1 | 0.0 | probable WRKY transcription factor 72 | ||||
Swissprot | Q9LXG8 | 0.0 | WRK72_ARATH; Probable WRKY transcription factor 72 | ||||
TrEMBL | R0H9M0 | 0.0 | R0H9M0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006287400.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2959 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 0.0 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10000606m |
Entrez Gene | 17883886 |