PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10000257m | ||||||||
Common Name | CARUB_v10000257mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 795aa MW: 86557.7 Da PI: 5.9539 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 6.8e-21 | 132 | 187 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Carubv10000257m 132 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 187 688999***********************************************999 PP | |||||||
2 | START | 216.1 | 1.2e-67 | 316 | 535 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 ela++a++elvk+a++eep+Wvks +++n+de++++f+++k +ea+r+sg+v+ ++ lve+l+d++ +W e+++ +a+t++v Carubv10000257m 316 ELALTAMDELVKLAQSEEPLWVKSLdgerDELNQDEYMRTFSTTKPtgLATEASRTSGMVIINSLALVETLMDSN-RWMEMFPcnvaRATTTDV 408 5899**************************************999999***************************.****************** PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 is g galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d+ ++++ s+v+R +lpSg++++++sng+skvtwveh++ Carubv10000257m 409 ISGGmagtinGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDPVRENSGGSPVIR--RLPSGCVVQDMSNGYSKVTWVEHAE 500 ************************************************************9******..************************* PP --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++++h+l+r+l++sgl +g ++w+atlqrqce+ Carubv10000257m 501 YDENQIHQLYRPLLRSGLGFGSQRWLATLQRQCEC 535 *********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-20 | 119 | 189 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-22 | 120 | 189 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.297 | 129 | 189 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-18 | 130 | 193 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.35E-18 | 131 | 189 | No hit | No description |
Pfam | PF00046 | 2.0E-18 | 132 | 187 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 164 | 187 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.589 | 307 | 538 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.47E-30 | 311 | 535 | No hit | No description |
CDD | cd08875 | 6.40E-115 | 311 | 534 | No hit | No description |
Pfam | PF01852 | 1.1E-60 | 316 | 535 | IPR002913 | START domain |
SMART | SM00234 | 2.4E-41 | 316 | 535 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.33E-20 | 554 | 778 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 795 aa Download sequence Send to blast |
MNFGSLFDNT PGGGSTGARL LSGLSYGNHT ASTNVLPGGA LAQAASLFSP PLTNKSVYAS 60 SGLSLALEQP ERGTNRGEAS MMRNNNVGGG DNFDGSVNRR SREEEHESRS GSDNVEGISG 120 EDQDAADKPP RKKRYHRHTP QQIQELESMF KECPHPDEKQ RLELSKRLCL ETRQVKFWFQ 180 NRRTQMKTQL ERHENALLRQ ENDKLRAENM SIREAMRNPT CTSCGGPAML GDISLEEHHL 240 RIENARLKDE LDRVCNLTGK FLGHHHHHYN SSLELAVGNN NGGNFAFPPD FGGGACLPPP 300 QQSGINGIDQ KSVLLELALT AMDELVKLAQ SEEPLWVKSL DGERDELNQD EYMRTFSTTK 360 PTGLATEASR TSGMVIINSL ALVETLMDSN RWMEMFPCNV ARATTTDVIS GGMAGTINGA 420 LQLMNAELQV LSPLVPVRNV NFLRFCKQHA EGVWAVVDVS IDPVRENSGG SPVIRRLPSG 480 CVVQDMSNGY SKVTWVEHAE YDENQIHQLY RPLLRSGLGF GSQRWLATLQ RQCECLAVLM 540 SSNVTSNDNT SITPGGRKSM LKLAQRMTFN FCSGISAPSV HCWSKLTVGN VDPDVRVMTR 600 KSVDDPGEPP GIVLSAATSV WLPASPQRLF DFLRNERMRC EWDILSNGGP MQEMAHIAKG 660 QDQGVSLLRS NAMNANQSCM LILQETCIDS SGALVVYAPV DIPAMNVVMN GGDSSYVALL 720 PSGFAVLPDG GMDGGSGGDG EQRPVGGGSL LTVAFQILVN NLPTAKLTVE SVETVNNLIS 780 CTVQKIRAAL QCES* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10000257m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK226968 | 0.0 | AK226968.1 Arabidopsis thaliana mRNA for homeodomain protein AHDP, complete cds, clone: RAFL09-36-B10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006287095.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | R0H8W0 | 0.0 | R0H8W0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006287095.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1128 | 27 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10000257m |
Entrez Gene | 17883924 |
Publications ? help Back to Top | |||
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