PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10000257m
Common NameCARUB_v10000257mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 795aa    MW: 86557.7 Da    PI: 5.9539
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10000257mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.8e-21132187156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Carubv10000257m 132 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 187
                      688999***********************************************999 PP

2START216.11.2e-673165351206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                      ela++a++elvk+a++eep+Wvks     +++n+de++++f+++k     +ea+r+sg+v+ ++  lve+l+d++ +W e+++    +a+t++v
  Carubv10000257m 316 ELALTAMDELVKLAQSEEPLWVKSLdgerDELNQDEYMRTFSTTKPtgLATEASRTSGMVIINSLALVETLMDSN-RWMEMFPcnvaRATTTDV 408
                      5899**************************************999999***************************.****************** PP

                      ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
            START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                      is g      galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d+ ++++  s+v+R  +lpSg++++++sng+skvtwveh++
  Carubv10000257m 409 ISGGmagtinGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDPVRENSGGSPVIR--RLPSGCVVQDMSNGYSKVTWVEHAE 500
                      ************************************************************9******..************************* PP

                      --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      ++++++h+l+r+l++sgl +g ++w+atlqrqce+
  Carubv10000257m 501 YDENQIHQLYRPLLRSGLGFGSQRWLATLQRQCEC 535
                      *********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-20119189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-22120189IPR009057Homeodomain-like
PROSITE profilePS5007117.297129189IPR001356Homeobox domain
SMARTSM003899.5E-18130193IPR001356Homeobox domain
CDDcd000861.35E-18131189No hitNo description
PfamPF000462.0E-18132187IPR001356Homeobox domain
PROSITE patternPS000270164187IPR017970Homeobox, conserved site
PROSITE profilePS5084842.589307538IPR002913START domain
SuperFamilySSF559611.47E-30311535No hitNo description
CDDcd088756.40E-115311534No hitNo description
PfamPF018521.1E-60316535IPR002913START domain
SMARTSM002342.4E-41316535IPR002913START domain
SuperFamilySSF559611.33E-20554778No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MNFGSLFDNT PGGGSTGARL LSGLSYGNHT ASTNVLPGGA LAQAASLFSP PLTNKSVYAS  60
SGLSLALEQP ERGTNRGEAS MMRNNNVGGG DNFDGSVNRR SREEEHESRS GSDNVEGISG  120
EDQDAADKPP RKKRYHRHTP QQIQELESMF KECPHPDEKQ RLELSKRLCL ETRQVKFWFQ  180
NRRTQMKTQL ERHENALLRQ ENDKLRAENM SIREAMRNPT CTSCGGPAML GDISLEEHHL  240
RIENARLKDE LDRVCNLTGK FLGHHHHHYN SSLELAVGNN NGGNFAFPPD FGGGACLPPP  300
QQSGINGIDQ KSVLLELALT AMDELVKLAQ SEEPLWVKSL DGERDELNQD EYMRTFSTTK  360
PTGLATEASR TSGMVIINSL ALVETLMDSN RWMEMFPCNV ARATTTDVIS GGMAGTINGA  420
LQLMNAELQV LSPLVPVRNV NFLRFCKQHA EGVWAVVDVS IDPVRENSGG SPVIRRLPSG  480
CVVQDMSNGY SKVTWVEHAE YDENQIHQLY RPLLRSGLGF GSQRWLATLQ RQCECLAVLM  540
SSNVTSNDNT SITPGGRKSM LKLAQRMTFN FCSGISAPSV HCWSKLTVGN VDPDVRVMTR  600
KSVDDPGEPP GIVLSAATSV WLPASPQRLF DFLRNERMRC EWDILSNGGP MQEMAHIAKG  660
QDQGVSLLRS NAMNANQSCM LILQETCIDS SGALVVYAPV DIPAMNVVMN GGDSSYVALL  720
PSGFAVLPDG GMDGGSGGDG EQRPVGGGSL LTVAFQILVN NLPTAKLTVE SVETVNNLIS  780
CTVQKIRAAL QCES*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10000257m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269680.0AK226968.1 Arabidopsis thaliana mRNA for homeodomain protein AHDP, complete cds, clone: RAFL09-36-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287095.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLR0H8W00.0R0H8W0_9BRAS; Uncharacterized protein
STRINGXP_006287095.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]