PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10000255m
Common NameCARUB_v10000255mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family FAR1
Protein Properties Length: 796aa    MW: 91533 Da    PI: 7.1121
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10000255mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.52.9e-2065139189
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      ++Yn+YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC+a ++v+++++gkw+++++++eHnHel
  Carubv10000255m  65 EYYNAYAIRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 139
                      69**************************************876..............589***************************98 PP
2FAR167.63.1e-21232308191
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCs+eg+++++              r+gC a +++k++++g w v++l+++HnH+l p
  Carubv10000255m 232 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEP 308
                      6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1565139IPR004330FAR1 DNA binding domain
PfamPF031011.0E-16232308IPR004330FAR1 DNA binding domain
PfamPF105517.1E-25407499IPR018289MULE transposase domain
PROSITE profilePS5096610.361681717IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-7689714IPR007527Zinc finger, SWIM-type
SMARTSM005753.1E-8692719IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
DELFCVFFNC SADTELNSFN NMVAKAYPVR VLHHNNNGIS EDEEGGSGVE PYVGLEFDTA  60
EEAREYYNAY AIRTGFKVRT GQLYRSRTDG TVSSRRFVCS KEGFQLNSRT GCTAFIRVQR  120
RDTGKWVLDQ IQKEHNHELG GEGQVEETTP RPSRAPAPTK LGVTVNPHRP KMKVVDESER  180
GTRSCPGGFK RFKGGGEGEV SDDHHQTQQP KAVNGTEPYA GLEFGSANEA CQFYQAYAEV  240
VGFRVRIGQL FRSKVDGSIT SRRFVCSREG FQHPSRMGCG AYMRIKRQDS GGWIVDRLNK  300
DHNHDLEPGK KNDAGMKKIT DDGTGGLDSV DLIELNDFGN NHIKKTRENR IGKEWYPLLL  360
DYFQSRQTED MGFFYAVELD VNNGSCMSIF WADSRARFAC SQFGDTVVFD TSYRKGNYAV  420
PFATIIGFNH HRQPVLLGCA MVADESKEAF LWLFQTWLRA MSGRRPRSIV ADQDLPIQQA  480
LVQVFPGAHH RYSAWQIREK EQENLRPFPS EFKYEYEKCI YQTQTTVEFD SVWNALINKY  540
GLRDDIWLRE IYEQRENWVP AYLRASFFAG IPINGTIEPF FGASLDALTP LREFISRYEQ  600
ALEQRREEER KEDFNSYNLQ PFLQTKEPVE EQCRRLYTLT VFRIFQNELV QSYNYLCLKT  660
YEEGAISRFL VRKCGNESEK HAVTFSASNL NSSCSCQMFE HEGLLCRHIL KVFNLLDIRE  720
LPSRYILHRW TKNAEFGFVR DMESGVSAQD LKALMVWSLR EAASKYIEFG TSSLEKYKLA  780
YEIMREGGKK LCWQR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10000255m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0686550.0AC068655.3 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome V, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286363.10.0protein FAR1-RELATED SEQUENCE 12 isoform X1
SwissprotQ3E7I50.0FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBLR0FB430.0R0FB43_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006286364.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.10.0FAR1-related sequence 12
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]