PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10000065m | ||||||||
Common Name | CARUB_v10000065mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ARF | ||||||||
Protein Properties | Length: 1205aa MW: 133890 Da PI: 7.1951 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.7 | 6.6e-21 | 127 | 214 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F Carubv10000065m 127 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfSMQPPCQ-ELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI 214 99*****************************98888885.9**********************************************96 PP | |||||||
2 | Auxin_resp | 117.4 | 1.2e-38 | 279 | 361 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPra+++eFvv+++k+ ka++ +vs+GmRf+m fete++ rr++Gtv+g+sdldpvrW+nS+Wr+L+ Carubv10000065m 279 AAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQ 361 799******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-38 | 117 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-37 | 121 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.19E-19 | 126 | 220 | No hit | No description |
PROSITE profile | PS50863 | 10.334 | 127 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-15 | 127 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-19 | 127 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-33 | 279 | 361 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.9E-9 | 1075 | 1163 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.956 | 1077 | 1170 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.08E-8 | 1090 | 1155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009638 | Biological Process | phototropism | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009785 | Biological Process | blue light signaling pathway | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1205 aa Download sequence Send to blast |
MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK 60 QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ PVNKYDRDAL LASDMGLKLN 120 RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR 180 HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRYINLN VPMLFRYLFV KMLTSFHFQL 240 RDGKAQLLLG IRRANRQQPA LSSSVISSDS MHIGVLAAAA HANANNSPFT IFYNPRAAPA 300 EFVVPLAKYT KAMYAQVSLG MRFRMIFETE ECGVRRYMGT VTGISDLDPV RWKNSQWRNL 360 QIGWDESAAG DRPSRVSVWD IEPVLTPFYI CPPPFFRPRF GGQPGMPDDD TDMESALKRA 420 MPWLDNSSEM KDASSTIFPG LSLVQWMNMQ QQQQNGQLPS AAAQPGFFPS MLSPTTALHN 480 NLGGTDDPSK LLSFQMPQGG VSSSNLQFNK PNVQSPMSQL PQPSTTLSQQ QQLQQLLHSS 540 LNQQQQQSQS QQQQQQQLLQ QQQQLQSQQH SNNNQSQSQQ QQQQQQQQHL QQQQQQQQQQ 600 LLQQQHQQPL QQQTQQQQQR TQSLQSHSRS QPQPQPQPQP QPHKLQQLQL PQNQLYNGQQ 660 AAQQLQAQQH LQPQLVSGSM ASSAITPPSS SHNQSFQQQQ QSKKLQQAHH HLGASTCQSS 720 VIETSKSSSN LMSVPPQETQ FQRQVEQQQP PGLSGQNQQT LLQQKAHQAQ AQQIFQQSLL 780 EQPHLQFQLL QRLQQQQQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPALSQ GHQFPSSCIN 840 NGLSTLQPPQ MLVSRPQEKQ HPPVGGGVKA YSGITDGGDA PSSSTSPSTN NCQISSSGFL 900 NRTQSGPAIL IPDAAIDMSS NLVQDLYSKS DMRLKQELVG QQKSKASLTD HHLEASASGT 960 SYGLDGGDNN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF VPDTLLSRGY DSQKDLQNML 1020 SNYGGVTTDI GTEMSTSAVR TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT 1080 KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG 1140 DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW RGHYDDNSAT 1200 SFNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 21 | 382 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10000065m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF042195 | 0.0 | AF042195.1 Arabidopsis thaliana auxin response factor 7 (ARF7) mRNA, complete cds. | |||
GenBank | AY080595 | 0.0 | AY080595.1 Arabidopsis thaliana unknown protein (At5g20730) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023636474.1 | 0.0 | auxin response factor 7 isoform X1 | ||||
TrEMBL | R0GSG5 | 0.0 | R0GSG5_9BRAS; Auxin response factor | ||||
STRING | XP_006286921.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20730.2 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10000065m |
Entrez Gene | 17884034 |