PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10000015m | ||||||||
Common Name | CARUB_v10000015mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25496.2 Da PI: 9.5117 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 86.2 | 4.5e-27 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C ++ + p++q++++ +++k++G++ +++l++a p++ r+++++sl+ e + r+ +P+yG+vg+++++++ql+q Carubv10000015m 4 SCNGCRVLRKGCSENCSIRSSLawiesPESQANATVFLAKFYGRTGLVNLINAGPDHLRPAIFRSLLHEVCGRVVNPIYGSVGLLWSGSWQLCQ 97 6********************************************************************************************* PP DUF260 90 lkaelallke 99 ++++++l +e Carubv10000015m 98 AAVDAVLKGE 107 **99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.387 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-20 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSENCS IRSSLAWIES PESQANATVF LAKFYGRTGL VNLINAGPDH 60 LRPAIFRSLL HEVCGRVVNP IYGSVGLLWS GSWQLCQAAV DAVLKGEAIT PIATDTAANG 120 QGPPIKVYDI RHISKKENAA ANGSSRHRKR YKTRRVKAKQ EEKANEASHD SSLSHQSEDE 180 TANFPIELEL KLGIEPVLSH VVVPVKKRRM GVFRTCHLEK YTCNEDVGLS K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10000015m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006279210.1 | 1e-173 | LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 1e-106 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | R0GLP3 | 1e-171 | R0GLP3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006279210.1 | 1e-172 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7721 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-108 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10000015m |
Entrez Gene | 17874345 |