PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_9969_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 25526.8 Da PI: 5.3835 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 26.4 | 1.7e-08 | 56 | 93 | 26 | 55 |
AP2 26 g........krkrfslgkfgtaeeAakaaiaarkkleg 55 g k+ r++lg++ t+e+Aa+a++ a+ +++g cra_locus_9969_iso_4_len_1103_ver_3 56 GypkfxeprKKSRIWLGTYSTPEMAARAHDVAAMSIKG 93 244454553469*********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.262 | 26 | 101 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-14 | 37 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.11E-17 | 62 | 101 | No hit | No description |
SuperFamily | SSF54171 | 4.12E-11 | 62 | 102 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-17 | 62 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-5 | 64 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MAAESSSYTS SSSSSSSSSR SSSSSSTSSL KKKKQQRPKR QQIRDNNNHS GGVVNGYPKF 60 XEPRKKSRIW LGTYSTPEMA ARAHDVAAMS IKGKSAILNF PQLTESLPRP ASLSPRDVQA 120 AAAKAAAMEE LTITTSSFSP SPSTSSSSSS SMSESTRTET TASEELGQII ELPSLEGSCY 180 DSSESRTELA LFDSAEEGWV FPPWLTSDGD LYGFINIDQA AVGEFLIPSS FDTVKWVS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028097122.1 | 5e-61 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 1e-43 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A4D9A3M3 | 3e-52 | A0A4D9A3M3_SALSN; EREBP-like factor | ||||
STRING | Solyc06g066540.1.1 | 9e-52 | (Solanum lycopersicum) |
Publications ? help Back to Top | |||
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