PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9855_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 155aa MW: 17349.2 Da PI: 7.0398

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9855_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	53.2	9.8e-17	102	139	1	39
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpyl 39 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rk +l cra_locus_9855_iso_4_len_462_ver_3 102 QEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKVIL 139 69****************************.99999776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.7E-7	100	146	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	18.015	101	155	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.0E-12	103	137	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	106	126	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
XDDDDDAARQ SQGAVNQQSD GSYVQEDTNF PTVASNVPPK SNESLMQPPQ FELVGHSIAC 60 ASNPYPDPYY GGMMATFGQP FVHPQLLDMQ HSRMPLPLDM AQEPVYVNAK QYHGILRRRQ 120 SRAKAELEKK LIKVRKVILL KFFFHSCCGT QAVGX

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065267.1	6e-73	nuclear transcription factor Y subunit A-1-like
Refseq	XP_027150160.1	6e-73	nuclear transcription factor Y subunit A-1-like
Swissprot	Q9LXV5	2e-34	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A068VE79	8e-71	A0A068VE79_COFCA; Uncharacterized protein
STRING	VIT_06s0004g02270.t01	6e-60	(Vitis vinifera)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]