PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9844_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 368aa    MW: 41243.4 Da    PI: 7.6343
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9844_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.66.4e-14243302362
                                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                                          + +r+rr++kNRe+A rsR+RK+a++ eLe  + +Le+eN++L ke  + +ke  kl +e
  cra_locus_9844_iso_1_len_2084_ver_3 243 AQQRQRRMIKNRESAARSRERKQAYQVELESMAVKLEEENEQLVKEKVQRTKERRKLLME 302
                                          679****************************************99999999999888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.3E-12238299No hitNo description
SMARTSM003381.1E-9241305IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.955243299IPR004827Basic-leucine zipper domain
PfamPF001708.5E-13243303IPR004827Basic-leucine zipper domain
CDDcd147076.29E-15245291No hitNo description
SuperFamilySSF579597.74E-9245299No hitNo description
PROSITE patternPS000360248263IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MASSKLMASS TSTSSRNSDL RRNPVSKPDP IVKPEFRNFH TQQILNSDNE NSNHSSNLDA  60
SSNSLMTVDE FLKNVYGESQ SPPAATTSEN ALLNAEITLL DAAGAISPIA DDHVAPVQTS  120
VRKKTVDEVW REIVAGKACE HRVVEPKEES MDEMMTLEDF LVKAGAVDDV SVVQHVSAEV  180
KVEAGSSGGM FSFDSPYMSR QGSVESGGAM GYGNGVMEIM GTAGAGKGKR RMANLLEPMD  240
KAAQQRQRRM IKNRESAARS RERKQAYQVE LESMAVKLEE ENEQLVKEKV QRTKERRKLL  300
MEKVIPVVEK RRPARVLRRV RSATWXLGFL CKQFEKEMEC HLDIKEQQNI SYQELFSGKH  360
QFWRISPE
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092013.11e-102G-box-binding factor 4-like isoform X2
SwissprotP427775e-48GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A3Q7GZ368e-97A0A3Q7GZ36_SOLLC; Uncharacterized protein
STRINGSolyc04g071510.2.11e-97(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27712452