PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9832_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 367aa    MW: 40332.1 Da    PI: 4.9195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9832_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19150200155
                                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                          ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  cra_locus_9832_iso_1_len_1459_ver_3 150 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 200
                                          59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.33E-31150207No hitNo description
SMARTSM003803.0E-38151214IPR001471AP2/ERF domain
PfamPF008475.0E-12151200IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-21151208IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.8E-30151208IPR001471AP2/ERF domain
PROSITE profilePS5103223.551151208IPR001471AP2/ERF domain
PRINTSPR003674.2E-10152163IPR001471AP2/ERF domain
PRINTSPR003674.2E-10174190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEKEENQTNK RVKYTEHRKQ TTIPAVLTGR TRRLLPEMNG VVPKVVRISV TDADATDSSS  60
DEDEVAAEAV FSRRQRVKRF INVVKIEPLC AGRDNGNGNG LSLNSGVLRS NNRSSTTADQ  120
NKKRKKSSGG ANATAAKQTE TDKVGGGNVK KFRGVRQRPW GKWAAEIRDP LRRVRLWLGT  180
YDTAEEAAMV YDHAAIQLRG PDALTNFTTP PPKVSTPPPE STSSGYNSGD ESHNDARSPK  240
SVLRFVSSSN EDAEEESPHY EAVKESRECS RGGSDDVSVS ENFSDYSLFP NDIFGFENPV  300
SDFSDLFGGE GISAFEESSF DCGNTFIQSS TINDHMDFGF GSNPWPTTDD FFQDFGDIFG  360
SDPLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-19150207159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121125KKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027080675.11e-127ethylene-responsive transcription factor CRF2-like
TrEMBLA0A068UV301e-119A0A068UV30_COFCA; Uncharacterized protein
STRINGXP_009763317.11e-116(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126