PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_9787_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 365aa MW: 40893.2 Da PI: 8.9971 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.1 | 3e-11 | 148 | 171 | 2 | 25 |
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 pr+rWt++LH+rFv+ave LGG+e cra_locus_9787_iso_3_len_1765_ver_3 148 PRMRWTTTLHARFVHAVELLGGHE 171 9*********************97 PP | |||||||
2 | G2-like | 45.8 | 1.4e-14 | 202 | 232 | 25 | 55 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 AtPk++lelm+vk+Ltl+hvkSHL +YR+ cra_locus_9787_iso_3_len_1765_ver_3 202 SGATPKSVLELMDVKDLTLAHVKSHLRMYRT 232 67****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.55E-10 | 145 | 172 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 146 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-9 | 198 | 232 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 204 | 232 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.55E-10 | 205 | 232 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MAKSDSNSFE LSLANNPNRV SSNSDHPNIN ISNLIQSTNS SNLIHSFPHP HHQIHHHHLL 60 HHHHQQNNNN NQAGLMSSEL GFLRPIRGIP VYQNHLSSSS LDKLIVPSTT TSNTFSSTTT 120 PAASFPSQNL MRSRILSRFP AKRSMRAPRM RWTTTLHARF VHAVELLGGH ESKXASLFLL 180 IFPMEEDNNF IIFWGVNFGN FSGATPKSVL ELMDVKDLTL AHVKSHLRMY RTVKTTDRAA 240 ASSGQSDIYE NGSSGDNSDQ DLMFDVQNSR KSELSVHQGR PNTTTHHQDK DNYHALWTNN 300 SSREAWLHGK TNPDSIGNIQ ISSIEKEIEM KCPSYDRISE VSSSSVSAET SPKKPNLEFT 360 LGRPL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00174 | DAP | Transfer from AT1G32240 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023898660.1 | 1e-111 | probable transcription factor KAN2 isoform X1 | ||||
Swissprot | Q9C616 | 3e-68 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A067KUB8 | 1e-105 | A0A067KUB8_JATCU; Uncharacterized protein | ||||
STRING | VIT_02s0012g01940.t01 | 1e-105 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2738 | 22 | 55 |
Publications ? help Back to Top | |||
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