PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9787_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family G2-like
Protein Properties Length: 334aa    MW: 37393.5 Da    PI: 9.8242
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9787_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.97e-31148201255
                              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                          pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHL +YR+
  cra_locus_9787_iso_1_len_1590_ver_3 148 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLRMYRT 201
                                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-14145201IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-27146201IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-21148201IPR006447Myb domain, plants
PfamPF002493.4E-7149200IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAKSDSNSFE LSLANNPNRV SSNSDHPNIN ISNLIQSTNS SNLIHSFPHP HHQIHHHHLL  60
HHHHQQNNNN NQAGLMSSEL GFLRPIRGIP VYQNHLSSSS LDKLIVPSTT TSNTFSSTTT  120
PAASFPSQNL MRSRILSRFP AKRSMRAPRM RWTTTLHARF VHAVELLGGH ERATPKSVLE  180
LMDVKDLTLA HVKSHLRMYR TVKTTDRAAA SSGQSDIYEN GSSGDNSDQD LMFDVQNSRK  240
SELSVHQGRP NTTTHHQDKD NYHALWTNNS SREAWLHGKT NPDSIGNIQI SSIEKEIEMK  300
CPSYDRISEV SSSSVSAETS PKKPNLEFTL GRPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-16149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-16149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-16149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-16149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-16149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-16149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-16149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-16149203458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023898660.11e-119probable transcription factor KAN2 isoform X1
SwissprotQ9C6162e-76KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A067KUB81e-114A0A067KUB8_JATCU; Uncharacterized protein
STRINGVIT_02s0012g01940.t011e-114(Vitis vinifera)
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]