PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9761_iso_9

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 334aa MW: 35579 Da PI: 7.7243

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9761_iso_9	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.4	2.3e-16	256	312	3	59
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 + kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L eN++L k+l +++++ + cra_locus_9761_iso_9_len_5833_ver_3 256 DAKRMRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEA 312 579*****************************************9999999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.8E-12	252	310	No hit	No description
SMART	SM00338	2.5E-18	254	318	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.737	256	311	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.7E-14	257	310	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.71E-12	258	308	No hit	No description
PROSITE pattern	PS00036	0	261	276	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
PPTSLPIRLS DDDSSISGSG GGHGLSKMMN RSSSEWAFQR FLQEASASVS ASASHNSQST 60 TPPPPPSPPV SSSGTAPHDV LEIKQATRNH SNDSRTDQNK NNSFNSNQSV KDGKIGTPSF 120 GVGGGGPPPN IPIDSQEYQA FLKSRLDLAC AAVALTRANY VKPRESDVAP ADNGSPAANA 180 SQPVAPQASS KGSGPDLPKA QDKDAGGPLG IPSLPVVQKK SGIQVRSTTS GSSREESDDD 240 EIDGDIETSQ NMDPTDAKRM RRMLSNRESA RRSRRRKQAH LTELETQVSQ LRVENSSLLK 300 RLTDISQKYN EAAVDNRVLK ADVETLRAKA LDET

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	277	RRSRRRKQ
2	272	277	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00040	PBM	Transfer from AT5G28770	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015062354.1	1e-106	light-inducible protein CPRF2
Swissprot	Q99090	7e-79	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A314KM21	1e-103	A0A314KM21_NICAT; Basic leucine zipper 63
TrEMBL	M1BPR9	1e-104	M1BPR9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400050096	1e-104	(Solanum tuberosum)

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]