PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9761_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 487aa MW: 52195.8 Da PI: 8.8572

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9761_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.2	5.5e-11	256	287	3	34
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 + kr rr+ +NRe+ArrsR+RK+a + eLe+ cra_locus_9761_iso_3_len_5407_ver_3 256 DAKRMRRMLSNRESARRSRRRKQAHLTELETQ 287 579**************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.5E-11	252	335	No hit	No description
SMART	SM00338	4.1E-8	254	343	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.967	256	288	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-8	257	287	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.09E-8	258	300	No hit	No description
PROSITE pattern	PS00036	0	261	276	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	1.1E-44	350	475	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
PPTSLPIRLS DDDSSISGSG GGHGLSKMMN RSSSEWAFQR FLQEASASVS ASASHNSQST 60 TPPPPPSPPV SSSGTAPHDV LEIKQATRNH SNDSRTDQNK NNSFNSNQSV KDGKIGTPSF 120 GVGGGGPPPN IPIDSQEYQA FLKSRLDLAC AAVALTRANY VKPRESDVAP ADNGSPAANA 180 SQPVAPQASS KGSGPDLPKA QDKDAGGPLG IPSLPVVQKK SGIQVRSTTS GSSREESDDD 240 EIDGDIETSQ NMDPTDAKRM RRMLSNRESA RRSRRRKQAH LTELETQAVL AIPSLSVFFY 300 EIRYNSSYFL LQVSQLRVEN SSLLKRLTDI SQKYNEAAVD NRVLKADVET LRAKVKMAEE 360 TVKRVTGLSP LFQAMSEIST ISMPSFAVSP SDASADAAVP VQENPKQHYY QAPSGNHLPA 420 HDPRIQNSML EIPSADIVHQ NPASATSGTA NKMGRTASLQ RVASLEHLQK RIRGELNSHG 480 TKGNGEQ

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

PPTSLPIRLS DDDSSISGSG GGHGLSKMMN RSSSEWAFQR FLQEASASVS ASASHNSQST  60
TPPPPPSPPV SSSGTAPHDV LEIKQATRNH SNDSRTDQNK NNSFNSNQSV KDGKIGTPSF  120
GVGGGGPPPN IPIDSQEYQA FLKSRLDLAC AAVALTRANY VKPRESDVAP ADNGSPAANA  180
SQPVAPQASS KGSGPDLPKA QDKDAGGPLG IPSLPVVQKK SGIQVRSTTS GSSREESDDD  240
EIDGDIETSQ NMDPTDAKRM RRMLSNRESA RRSRRRKQAH LTELETQAVL AIPSLSVFFY  300
EIRYNSSYFL LQVSQLRVEN SSLLKRLTDI SQKYNEAAVD NRVLKADVET LRAKVKMAEE  360
TVKRVTGLSP LFQAMSEIST ISMPSFAVSP SDASADAAVP VQENPKQHYY QAPSGNHLPA  420
HDPRIQNSML EIPSADIVHQ NPASATSGTA NKMGRTASLQ RVASLEHLQK RIRGELNSHG  480
TKGNGEQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	277	RRSRRRKQ
2	272	277	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00040	PBM	Transfer from AT5G28770	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027160960.1	1e-178	light-inducible protein CPRF2 isoform X1
Swissprot	Q99090	1e-125	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A314KM21	1e-173	A0A314KM21_NICAT; Basic leucine zipper 63
STRING	XP_009787496.1	1e-173	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2934	24	44

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]