PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_9734_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 454aa MW: 49032.5 Da PI: 6.4654 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.8 | 1e-27 | 171 | 225 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++ cra_locus_9734_iso_5_len_1881_ver_3 171 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 225 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.095 | 168 | 227 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-27 | 169 | 228 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-18 | 170 | 228 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-26 | 171 | 225 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.9E-8 | 174 | 223 | IPR001005 | SANT/Myb domain |
PRINTS | PR01217 | 1.5E-9 | 268 | 284 | No hit | No description |
PRINTS | PR01217 | 1.5E-9 | 309 | 321 | No hit | No description |
PRINTS | PR01217 | 1.5E-9 | 322 | 343 | No hit | No description |
PRINTS | PR01217 | 1.5E-9 | 348 | 364 | No hit | No description |
PRINTS | PR01217 | 1.5E-9 | 370 | 387 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MLAVSPLRSN NNERKKEICE ISSSTSFPVV DDFPDFGGAN LLDSIDFDEL FVGINGEDDV 60 LPDLEMDPHD ILAEFSLTES LSPSVSLDHQ HHEHSQITSS ISAADYDKLV ELEDKANSSS 120 ASDDVGSGSS TLTQGEDVVS KSTVLNPSSK EGDKGRKSSS TQSKNSSGKK KVKVDWTPEL 180 HRRFVQAVEQ LGVDKAVPSR ILELMGIDCL TRHNIASHLQ KYRSHRKHLL AREAEAANWS 240 QRRQLYGGTA AAAGGGKRDV NPWLAPTMGF PPPMAPAAVP HFRPLHVWGH PSVDQSLMHV 300 WPKHLAPPPR PPTWPPTPTP TPTPPPPPPD PNSFWHSPHQ RVPNPLTPGT PCFPPPLTPA 360 RFPTPPVPGI PPPPMYKVDP VAGMGVPAPA TGQAVPHAPP LDFHPSTESV DAAIGDVLSK 420 PWLPLPLGLK PPSIDSVLVE LQRQGIPKIP PVCT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-16 | 167 | 223 | 1 | 57 | ARR10-B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027127047.1 | 1e-170 | transcription activator GLK1-like | ||||
TrEMBL | V7BXL1 | 1e-162 | V7BXL1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007149809.1 | 1e-163 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2532 | 23 | 56 |