PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_9734_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 250aa MW: 26917.2 Da PI: 10.1485 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 25.8 | 2.3e-08 | 1 | 21 | 36 | 56 |
G2-like 36 mkvkgLtlehvkSHLQkYRla 56 m++++Lt+++++SHLQkYR++ cra_locus_9734_iso_4_len_1286_ver_3 1 MGIDCLTRHNIASHLQKYRSH 21 99*****************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-7 | 1 | 24 | IPR009057 | Homeodomain-like |
PRINTS | PR01217 | 9.6E-9 | 60 | 76 | No hit | No description |
PRINTS | PR01217 | 9.6E-9 | 100 | 121 | No hit | No description |
PRINTS | PR01217 | 9.6E-9 | 121 | 137 | No hit | No description |
PRINTS | PR01217 | 9.6E-9 | 138 | 155 | No hit | No description |
PRINTS | PR01217 | 9.6E-9 | 158 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGIDCLTRHN IASHLQKYRS HRKHLLAREA EAANWSQRRQ LYGGTAAAAG GGKRDVNPWL 60 APTMGFPPPM APAAVPHFRP LHVWGHPSVD QSLMHVWPKH LAPPPRPPTW PPTPTPTPTP 120 PPPPPDPNSF WHSPHQRVPN PLTPGTPCFP PPLTPARFPT PPVPGIPPPP MYKVDPVAGM 180 GVPAPATGQA VPHAPPLDFH PSTESVDAAI GDVLSKPWLP LPLGLKPPSI DSVLVELQRQ 240 GIPKIPPVCT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021279775.1 | 1e-104 | transcription activator GLK1 | ||||
Swissprot | Q9SIV3 | 2e-55 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A067EF82 | 2e-99 | A0A067EF82_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PT75 | 2e-99 | A0A2H5PT75_CITUN; Uncharacterized protein | ||||
TrEMBL | A0A2P5QWU7 | 1e-99 | A0A2P5QWU7_GOSBA; Uncharacterized protein | ||||
STRING | XP_006470159.1 | 1e-101 | (Citrus sinensis) |