PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9605_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 673aa MW: 77888.7 Da PI: 8.2485

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9605_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.5	8.2e-22	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 ++Yn YA+evGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ +++ cra_locus_9605_iso_1_len_2531_ver_3 60 NYYNCYAREVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSK 128 69***************************************9988.....99**************** PP FAR1 75 kwevtkleleHnHel 89 +w++ ++ +eHnH l cra_locus_9605_iso_1_len_2531_ver_3 129 RWRILEVTHEHNHLL 143 ***********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-18	60	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-29	262	355	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.854	549	585	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.3E-4	558	581	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	560	587	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MDEVSCNGEQ SAVEQGSETP EERDGEKTAL DSENVVPEER KEFVAPAVGM EFESYDDAYN 60 YYNCYAREVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI 120 RMRLVDSKRW RILEVTHEHN HLLGARVCKS VKKISNGTKR KLQSNTEAEV RTIKLYRALV 180 IDAGTNGNSN SISREPKISS DHPDQLNLRK GDTQAIYNYL CRMQLTNPNF FYLMDLNDEG 240 CVRNFFWADA RSRAASVYFD DVIFLDNTFL SNKYEIPLVA FVGMNHHGQS ILLGCGLLAG 300 ETTDSYNWLF KGWLTCTSGR HPQTIISDRC KILQSAISEA FPRSQHRFGL SHIMRKVPEK 360 LGGLRNYDVI RKTLFKVVYE TLKPFDFEAA WAFMIQRFGI GDHGWLRSLY EDRSRWAPVY 420 LKDVFFAGMA TARPGETLNA FFDKYVHKQT PLKEFLDKYE LALQKKHKEE VLTDVESRNL 480 SPELKTRCSF ELQLSKVYTR EIFKRFQLEV EEMYSCFSTT QLHIDGPIII FLVKERVLAE 540 GDKREIKDYE VLYNRAAGEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP FKYILSRWKK 600 DYKRLHIPDQ GGGGGFANGD ATETVQWYNQ LYRSALQVIE EGMISLDHYK VALQAFEESL 660 SRVHGTEHKI DQK

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MDEVSCNGEQ SAVEQGSETP EERDGEKTAL DSENVVPEER KEFVAPAVGM EFESYDDAYN  60
YYNCYAREVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI  120
RMRLVDSKRW RILEVTHEHN HLLGARVCKS VKKISNGTKR KLQSNTEAEV RTIKLYRALV  180
IDAGTNGNSN SISREPKISS DHPDQLNLRK GDTQAIYNYL CRMQLTNPNF FYLMDLNDEG  240
CVRNFFWADA RSRAASVYFD DVIFLDNTFL SNKYEIPLVA FVGMNHHGQS ILLGCGLLAG  300
ETTDSYNWLF KGWLTCTSGR HPQTIISDRC KILQSAISEA FPRSQHRFGL SHIMRKVPEK  360
LGGLRNYDVI RKTLFKVVYE TLKPFDFEAA WAFMIQRFGI GDHGWLRSLY EDRSRWAPVY  420
LKDVFFAGMA TARPGETLNA FFDKYVHKQT PLKEFLDKYE LALQKKHKEE VLTDVESRNL  480
SPELKTRCSF ELQLSKVYTR EIFKRFQLEV EEMYSCFSTT QLHIDGPIII FLVKERVLAE  540
GDKREIKDYE VLYNRAAGEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP FKYILSRWKK  600
DYKRLHIPDQ GGGGGFANGD ATETVQWYNQ LYRSALQVIE EGMISLDHYK VALQAFEESL  660
SRVHGTEHKI DQK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027125466.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_027125467.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_027125468.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_027168845.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_027168846.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_027168847.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2R6PSK4	0.0	A0A2R6PSK4_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	VIT_09s0002g07400.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]