PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9526_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 718aa    MW: 77512.6 Da    PI: 6.7308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9526_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.5e-16456502455
                                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                           hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  cra_locus_9526_iso_1_len_2964_ver_3 456 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 502
                                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-20449513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228452501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.74E-17455506No hitNo description
PfamPF000102.4E-13456502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-20456510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17458507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MPLSEFLRMA RGKLEASQQK TASPTDLSSV PDNDLVELVW ENGQVMMQGQ SNRAKKSPSF  60
NSILSQMPAV RDKYIGNVSS SKFGKFGSVE TVLEDAVPSV PSGEIRLNQD DDMVPWLNYP  120
VDDGFREDLC SELLPEISGV TGNEPSTRNS FGSMDKSQLV GHPHNAPRHH GVSTDIRNAS  180
KICSSRTGLL NPYLSQQGQI SVPSLGSISN AAMNSASHNQ EISFGDSVQG QLSAGGFVSM  240
KAGKKNEGSS NNGSHLLNFS HFSRPAALFR GNLQKTDGLT ASCSAGIEKM VKEEKVPATS  300
SRIPMKSALI EPSSNSRKEN EFHNQPHLAN SKIDSRPSSV KPLEEACPAE QYDALCREDS  360
IKNDNYPCQV FGSSTSKGLT DGEKSVEPVV AASSVCSGNS AERNSQDQTH NSKRKHRDNE  420
ESESRSEDIE EESVGIKKPT PARGGSGSKR SRAAEVHNLS ERRRRDRINE KMRALQELIP  480
NCNKADKASM LDEAIEYLKT LQLQVQIMSM GAGLCMPPMM FPTGLQHMHG AHMPHFAPMS  540
SGMGMGFGMG MLDMNSGSPR YPIFPVPPMQ GSQFPSPISG SSNFQGMAGS NLPVFGHPSQ  600
GFPMSVPRTP LVPLMRQAPL SSTLNLNASR MGTHAEPLRR TSPVFIHDIR PQDKNSNIGQ  660
NAIASNSLSQ TSAELPTTKD VDVPPASLSK DVTVQDACGN ATANLTNTDD VSREEGSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1460465ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108072.10.0transcription factor PIF3-like isoform X1
TrEMBLA0A0P0BZY00.0A0A0P0BZY0_CATRO; Phytochrome interacting factor 3
STRINGVIT_14s0060g00260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437