PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9511_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 1057aa MW: 118267 Da PI: 9.4919

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9511_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.3e-09	11	44	3	38
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 W++eE ++++a +++G++ Wk++a+ + +R+ cra_locus_9511_iso_2_len_3494_ver_3 11 QWSKEELTRFYEAYRKYGKD-WKKVASAVR-NRSVD 44 6***************99.*******.99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.696	7	60	IPR017884	SANT domain
SMART	SM00717	2.2E-4	8	56	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.24E-10	10	56	IPR009057	Homeodomain-like
Pfam	PF00249	7.5E-8	11	46	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-5	11	44	IPR009057	Homeodomain-like
CDD	cd00167	1.13E-5	12	46	No hit	No description
SMART	SM01135	1.7E-54	599	700	IPR033471	DIRP domain
Pfam	PF06584	9.4E-33	599	699	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1057 aa Download sequence Send to blast
KRKLSDMLGP QWSKEELTRF YEAYRKYGKD WKKVASAVRN RSVDMVEALY TMNRAYLSLP 60 EGTASVVGLN AMMTDHYSNL AGSDSEQESN DGAGTSRKPQ KRARGRVQPG NSKASDVQIT 120 SPMVPSGYVG LQLMKKKRTG GSGPRAVGKR TPRFPVSYSY ENIKGEKFFS PTRQGLRMKT 180 DTNDDDVAHE IALALTEASQ RGSSPQASQT PILRSESVMS SPARNAELKR AGLKSVNARN 240 VESDVDDEDL EGSMEADTGD LSRHGPFVKP RVGTMVNKGR RIDRRKLDVD DSSDNHLDDI 300 KEACSGTEEG QGLGASRGKL KIDAKISRSS PQGSRKKSKK VLFSRDEAPA FDALQTLADL 360 SLMMPAEGNE DESMVQIKEE NDDHVDESGS LETMPTDNQR DRRKSSGVRV KVDRSSSRLG 420 VALSKAPKPG KVSTVDDKDL SDMKQEVYQS KSVRKKQKIR KSEAHLDSHV SESQEAEARD 480 IGKMSKNKRS QSASPKLIKN AEHSSSTDPR REGSDSTQST VQVPPAKEIS LPTSVRSRRK 540 RNLKKPNIQK DLKFPDKVFN ERSCNPASSL HDTASILKEK LSNCLSNHRL RRWCTYEWFY 600 SAIDYPWFAK REFVEYLYHV GLGHVPRLTR VEWGVIRSSL GKPRRFSQQF LKEEKKKLNQ 660 YRDSVRKHYN DLREGTQEGL PTDLARPLSV GQRVIAIHPK TREIHDGNVL TVDHARCRVQ 720 FDRPELGVEF VMDIDCMPLN PLENIPTLLA RHIALDRFFE NFNELRTVER AKASPGGEVD 780 NFNGLSHSSP STYPVTNLLK QTKVAPEDTN MQARIVPTET SPYQQIPYPQ PCTSAQIQAK 840 EADIQAVAEL TRALDKKEAV VFELKRMNDD VVDDCSLKES EPFKKQYAAV LVQLQEANEQ 900 VSSSLFRLRQ RNTYRGTISL SWPRPIANVG DHLNSLERST CQPHESGTHA NEIIEGSRAK 960 ARTMVDIAMQ VADPKSKCAS DKNEAQIPAE LITQCVATLL MIQKCTERQF PPADVAQILD 1020 SAVTSLKPCC SQNLSMYAEI QKCMGMIKNQ ILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1057 aa Download sequence Send to blast

KRKLSDMLGP QWSKEELTRF YEAYRKYGKD WKKVASAVRN RSVDMVEALY TMNRAYLSLP  60
EGTASVVGLN AMMTDHYSNL AGSDSEQESN DGAGTSRKPQ KRARGRVQPG NSKASDVQIT  120
SPMVPSGYVG LQLMKKKRTG GSGPRAVGKR TPRFPVSYSY ENIKGEKFFS PTRQGLRMKT  180
DTNDDDVAHE IALALTEASQ RGSSPQASQT PILRSESVMS SPARNAELKR AGLKSVNARN  240
VESDVDDEDL EGSMEADTGD LSRHGPFVKP RVGTMVNKGR RIDRRKLDVD DSSDNHLDDI  300
KEACSGTEEG QGLGASRGKL KIDAKISRSS PQGSRKKSKK VLFSRDEAPA FDALQTLADL  360
SLMMPAEGNE DESMVQIKEE NDDHVDESGS LETMPTDNQR DRRKSSGVRV KVDRSSSRLG  420
VALSKAPKPG KVSTVDDKDL SDMKQEVYQS KSVRKKQKIR KSEAHLDSHV SESQEAEARD  480
IGKMSKNKRS QSASPKLIKN AEHSSSTDPR REGSDSTQST VQVPPAKEIS LPTSVRSRRK  540
RNLKKPNIQK DLKFPDKVFN ERSCNPASSL HDTASILKEK LSNCLSNHRL RRWCTYEWFY  600
SAIDYPWFAK REFVEYLYHV GLGHVPRLTR VEWGVIRSSL GKPRRFSQQF LKEEKKKLNQ  660
YRDSVRKHYN DLREGTQEGL PTDLARPLSV GQRVIAIHPK TREIHDGNVL TVDHARCRVQ  720
FDRPELGVEF VMDIDCMPLN PLENIPTLLA RHIALDRFFE NFNELRTVER AKASPGGEVD  780
NFNGLSHSSP STYPVTNLLK QTKVAPEDTN MQARIVPTET SPYQQIPYPQ PCTSAQIQAK  840
EADIQAVAEL TRALDKKEAV VFELKRMNDD VVDDCSLKES EPFKKQYAAV LVQLQEANEQ  900
VSSSLFRLRQ RNTYRGTISL SWPRPIANVG DHLNSLERST CQPHESGTHA NEIIEGSRAK  960
ARTMVDIAMQ VADPKSKCAS DKNEAQIPAE LITQCVATLL MIQKCTERQF PPADVAQILD  1020
SAVTSLKPCC SQNLSMYAEI QKCMGMIKNQ ILALIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	453	459	RKKQKIR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073295.1	0.0	protein ALWAYS EARLY 3-like
Refseq	XP_027184074.1	0.0	protein ALWAYS EARLY 3
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A068UX25	0.0	A0A068UX25_COFCA; Uncharacterized protein
STRING	XP_009595580.1	0.0	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]