PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_94_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 335aa    MW: 36647.4 Da    PI: 8.4829
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_94_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.44.5e-201459147
                                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                       +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + 
  cra_locus_94_iso_1_len_1200_ver_3 14 KGPWSPEEDELLQQLVQKHGPRNWSLISKSIQ-GRSGKSCRLRWCNQ 59
                                       79******************************.***********985 PP
2Myb_DNA-binding55.51.3e-1768110347
                                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                        ++T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
  cra_locus_94_iso_1_len_1200_ver_3  68 AFTPEEDETIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 110
                                        79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.759964IPR017930Myb domain
SuperFamilySSF466893.59E-3211107IPR009057Homeodomain-like
SMARTSM007172.0E-171362IPR001005SANT/Myb domain
PfamPF002497.5E-201459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-261567IPR009057Homeodomain-like
CDDcd001671.53E-161658No hitNo description
SMARTSM007171.2E-1465113IPR001005SANT/Myb domain
PROSITE profilePS5129421.22966115IPR017930Myb domain
CDDcd001675.41E-1268111No hitNo description
PfamPF002497.6E-1568110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2368114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSSNSMRKDV DRIKGPWSPE EDELLQQLVQ KHGPRNWSLI SKSIQGRSGK SCRLRWCNQL  60
SPQVEHRAFT PEEDETIIRA HARFGNKWAT IARLLSGRTD NAIKNHWNST LKRKCSSMSG  120
DEEGNDYSND LIQHQQPLKR SVSAGSAGPV SGGLYLSPGS PSGSDVSDSS LPNMSSSQLF  180
KPVARTGSVL PPQLETTTSS TNNNDDPPTS LSLSLPGIDP TESINRTNEL TQPKNPIQLL  240
PPSPPPSPPS APAPSPSLIQ QVSINPVAIP PQKAPIVPTA PVVVVQTPPV VAQQQDKVFV  300
PFSAELLAVM QEMIKKEVWS YMNMMGMERQ QQQQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-411311457158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-411311457158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099313.11e-134transcription factor MYB44-like
SwissprotO231601e-99MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A484LGT61e-133A0A484LGT6_9ASTE; Uncharacterized protein
STRINGVIT_07s0129g01050.t011e-128(Vitis vinifera)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]