PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9426_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TALE

Protein Properties

Length: 336aa MW: 37469.7 Da PI: 5.2718

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9426_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.4	1.2e-08	262	294	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp+++e+ +L++ +gL++rq+ +WF N+R ++ cra_locus_9426_iso_5_len_1549_ver_3 262 PYPTEDEKNKLSEITGLDQRQINNWFINQRKRH 294 8*****************************885 PP
2	ELK	38.7	2.1e-13	214	235	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++L+rKYsgyL+sL++EF+ cra_locus_9426_iso_5_len_1549_ver_3 214 ELKEMLMRKYSGYLSSLRKEFL 235 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	3.5E-19	63	107	IPR005540	KNOX1
Pfam	PF03790	2.4E-19	65	106	IPR005540	KNOX1
SMART	SM01256	7.7E-24	110	161	IPR005541	KNOX2
Pfam	PF03791	2.0E-23	114	160	IPR005541	KNOX2
SMART	SM01188	3.1E-7	214	235	IPR005539	ELK domain
PROSITE profile	PS51213	11.383	214	234	IPR005539	ELK domain
Pfam	PF03789	2.2E-10	214	235	IPR005539	ELK domain
PROSITE profile	PS50071	12.438	234	297	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-18	236	308	IPR009057	Homeodomain-like
SMART	SM00389	7.3E-13	236	301	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.3E-25	239	299	IPR009057	Homeodomain-like
CDD	cd00086	2.33E-12	250	298	No hit	No description
Pfam	PF05920	7.1E-16	254	293	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	272	295	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MDELYRIHSS FSSSNGTGHI VEVVHGRGNN NNMEEVVNGL RAAVGHGHDE SHQVNIIGSE 60 MSDVLKAQIA NHPFYPNLVS AYIQCRKVGA PPELASILEE ISKENHPLAS PSEMGTDPEL 120 DQFMESYCEA LNKYKEELLK PFDEATTFLN NIESQLSNLC KENYMATTTT TSSLTSGNYH 180 SDEAGVTSDE DLSCGEVEVA ESQESSGGGQ AENELKEMLM RKYSGYLSSL RKEFLKKRKK 240 GKLPKNARLA LLDWWNTHYR WPYPTEDEKN KLSEITGLDQ RQINNWFINQ RKRHWRPSED 300 MRFALMQGVT STLAGPPMYF DAAGGGPPGH GGGFGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	238	LRKEFLKKRK
2	235	239	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269\|PubMed:10488233}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00670	PBM	Transfer from GRMZM2G087741	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027114835.1	1e-157	homeobox protein knotted-1-like 1 isoform X1
Refseq	XP_027163737.1	1e-157	homeobox protein knotted-1-like 1
Swissprot	Q9FP29	7e-99	KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBL	A0A068VEZ6	1e-153	A0A068VEZ6_COFCA; Uncharacterized protein
STRING	XP_009596945.1	1e-135	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Park SH, et al. A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice. Planta, 2007. 227(1): p. 1-12 [PMID:17624547]